RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 TRIM6Q9C030 488 aaPredicted RBP10.07□□□□□ -0.8
VPS52-216ENST00000471309 NXF3Q9H4D5 531 aaKnown RBP10.07□□□□□ -0.8
VPS52-216ENST00000471309 FAM124BQ9H5Z6 455 aaPredicted RBP10.07□□□□□ -0.8
VPS52-216ENST00000471309 CHST12Q9NRB3 414 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 SNTG2Q9NY99 539 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 CNTN3Q9P232 1028 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 SIX4Q9UIU6 781 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 NOC2LQ9Y3T9 749 aaKnown RBP10.07□□□□□ -0.8
VPS52-216ENST00000471309 NCANO14594 1321 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 A0A0A6YYK5 440 aaPredicted RBP10.06□□□□□ -0.8
VPS52-216ENST00000471309 A0A0U1RQG5 324 aaPredicted RBP10.06□□□□□ -0.8
VPS52-216ENST00000471309 A0A1W2PQ45 241 aaPredicted RBP10.06□□□□□ -0.8
VPS52-216ENST00000471309 A0A1W2PQY0 241 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 CTAGE9A4FU28 777 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 TACC1O75410 805 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 RPS6KA5O75582 802 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 RECQL4O94761 1208 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 CLSTN1O94985 981 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 CHRNA1P02708 482 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 ITGB3P05106 788 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 TMEM253P0C7T8 217 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 KRT5P13647 590 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 CHRNB2P17787 502 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 ASPAP45381 313 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 ZNF132P52740 706 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 YWHAEP62258 255 aaKnown RBP10.06□□□□□ -0.8
VPS52-216ENST00000471309 TRIM71Q2Q1W2 868 aaKnown RBP10.06□□□□□ -0.8
VPS52-216ENST00000471309 FAM26DQ5JW98 314 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 ALKAL1Q6UXT8 129 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 RPUSD2Q8IZ73 545 aaKnown RBP10.06□□□□□ -0.8
VPS52-216ENST00000471309 RBBP8NLQ8NC74 664 aaPredicted RBP10.06□□□□□ -0.8
VPS52-216ENST00000471309 DDX1Q92499 740 aaKnown RBP10.06□□□□□ -0.8
VPS52-216ENST00000471309 KIF12Q96FN5 646 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 NOX5Q96PH1 765 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 PACSIN1Q9BY11 444 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 TSKSQ9UJT2 592 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 NOD1Q9Y239 953 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 PTPN22Q9Y2R2 807 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 PCDHB2Q9Y5E7 798 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 CAPN6Q9Y6Q1 641 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 DUSP10Q9Y6W6 482 aa10.06□□□□□ -0.8
VPS52-216ENST00000471309 ANKRD62A6NC57 917 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 KBTBD13C9JR72 458 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 DNM1LO00429 736 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 GPR182O15218 404 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 URI1O94763 535 aaPredicted RBP10.05□□□□□ -0.8
VPS52-216ENST00000471309 KRT19P08727 400 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 GZMAP12544 262 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 P4HA1P13674 534 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 POLR2BP30876 1174 aaKnown RBP10.05□□□□□ -0.8
VPS52-216ENST00000471309 GTF2F1P35269 517 aaKnown RBP eCLIP10.05□□□□□ -0.8
VPS52-216ENST00000471309 THPOP40225 353 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 RBP5P82980 135 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 FMO1Q01740 532 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 TUBB2AQ13885 445 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 ZBTB6Q15916 424 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 XKR4Q5GH76 650 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 ZNF667Q5HYK9 610 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 FBXO47Q5MNV8 452 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 SCARA3Q6AZY7 606 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 PALB2Q86YC2 1186 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 USP38Q8NB14 1042 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 SMG8Q8ND04 991 aaKnown RBP10.05□□□□□ -0.8
VPS52-216ENST00000471309 MYRIPQ8NFW9 859 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 SH3TC2Q8TF17 1288 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 TUBB2BQ9BVA1 445 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 BCO2Q9BYV7 579 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 ISCUQ9H1K1 167 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 ERVK-5Q9HDB9 667 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 PAK6Q9NQU5 681 aaPredicted RBP10.05□□□□□ -0.8
VPS52-216ENST00000471309 STARD7Q9NQZ5 370 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 TRMT13Q9NUP7 481 aaKnown RBP10.05□□□□□ -0.8
VPS52-216ENST00000471309 SEPT11Q9NVA2 429 aaKnown RBP10.05□□□□□ -0.8
VPS52-216ENST00000471309 DPP3Q9NY33 737 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 UBQLN1Q9UMX0 589 aaKnown RBP10.05□□□□□ -0.8
VPS52-216ENST00000471309 ST3GAL5Q9UNP4 418 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 HES2Q9Y543 173 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 IPPQ9Y573 584 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 PCDHB4Q9Y5E5 795 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 PCDHGC5Q9Y5F6 944 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 SQORQ9Y6N5 450 aa10.05□□□□□ -0.8
VPS52-216ENST00000471309 XPOTO43592 962 aaKnown RBP10.04□□□□□ -0.8
VPS52-216ENST00000471309 RTN2O75298 545 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 MOCS3O95396 460 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 MMEP08473 750 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 HSPA1AP0DMV8 641 aaKnown RBP10.04□□□□□ -0.8
VPS52-216ENST00000471309 HSPA1BP0DMV9 641 aaKnown RBP10.04□□□□□ -0.8
VPS52-216ENST00000471309 KCNE1P15382 129 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 CYP3A5P20815 502 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 GNA15P30679 374 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 RAB27AP51159 221 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 GALCP54803 685 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 AMPD2Q01433 879 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 PAK2Q13177 524 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 LPIN1Q14693 890 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 TCEAL1Q15170 157 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 IFI16Q16666 785 aaKnown RBP10.04□□□□□ -0.8
VPS52-216ENST00000471309 TAF3Q5VWG9 929 aa10.04□□□□□ -0.8
VPS52-216ENST00000471309 TWF2Q6IBS0 349 aaKnown RBP10.04□□□□□ -0.8
VPS52-216ENST00000471309 PPP1R2P3Q6NXS1 205 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 176.7 ms