RNA–Protein interactions for RNA: ENST00000471167.1

PRPF40A-206, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 333 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-206ENST00000471167 Q96MF0 132 aa6.63□□□□□ -1.35
PRPF40A-206ENST00000471167 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.63□□□□□ -1.35
PRPF40A-206ENST00000471167 KCNE5Q9UJ90 142 aa6.63□□□□□ -1.35
PRPF40A-206ENST00000471167 LRRC14BA6NHZ5 514 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 NT5C1B-RDH14C9J2C7 533 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 SLC43A1O75387 559 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 FOSP01100 380 aaPredicted RBP6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 ITGAMP11215 1152 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 ADKP55263 362 aaKnown RBP6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 SNAPC2Q13487 334 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 GEN1Q17RS7 908 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 PABPC1LQ4VXU2 614 aaKnown RBP6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 UTP14CQ5TAP6 766 aaKnown RBP6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 MIGA2Q7L4E1 593 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 LCORLQ8N3X6 602 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 ZG16BQ96DA0 208 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 RNF31Q96EP0 1072 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 CLPTM1LQ96KA5 538 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 KLHL32Q96NJ5 620 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 SMAD5Q99717 465 aaKnown RBP6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 VRK1Q99986 396 aaPredicted RBP6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 CTTNBP2NLQ9P2B4 639 aa6.62□□□□□ -1.35
PRPF40A-206ENST00000471167 AGFG2O95081 481 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 ALAS1P13196 640 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 SLC16A1P53985 500 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 EFCAB2Q5VUJ9 269 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 TMPRSS9Q7Z410 1059 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 RSPH3Q86UC2 560 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 FAM43AQ8N2R8 423 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 PRR18Q8N4B5 295 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 TMIEQ8NEW7 156 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 GALNT9Q9HCQ5 603 aa6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 SAP30BPQ9UHR5 308 aaKnown RBP6.61□□□□□ -1.35
PRPF40A-206ENST00000471167 E9PLN8 166 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 F2RL2O00254 374 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 MGST3O14880 152 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 HAUS5O94927 633 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 RHOBTB3O94955 611 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 ESRRBO95718 433 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 CD1AP06126 327 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 HKR1P10072 659 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 PTH2RP49190 550 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 VAV2P52735 878 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 USP14P54578 494 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 PTPROQ16827 1216 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 UAP1L1Q3KQV9 507 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 KHDC1Q4VXA5 237 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 ARMC6Q6NXE6 501 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 SLC44A3Q8N4M1 653 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 FAM98AQ8NCA5 519 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 NSUN7Q8NE18 718 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 STAG1Q8WVM7 1258 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 VKORC1Q9BQB6 163 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 MRPS18AQ9NVS2 196 aaKnown RBP6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 JKAMPQ9P055 326 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 RNF181Q9P0P0 153 aa6.6□□□□□ -1.35
PRPF40A-206ENST00000471167 MYADML2A6NDP7 307 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 KIAA0355O15063 1070 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 MALP21145 153 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 CREMQ03060 361 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 RAB39AQ14964 217 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 ZNF362Q5T0B9 420 aaPredicted RBP6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 PNMA8AQ86V59 439 aaPredicted RBP6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 ZNF575Q86XF7 245 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 PNKPQ96T60 521 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 REXO4Q9GZR2 422 aaKnown RBP6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 FOXJ2Q9P0K8 574 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 CALCOCO1Q9P1Z2 691 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 NOX1Q9Y5S8 564 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 MRFAP1Q9Y605 127 aa6.59□□□□□ -1.35
PRPF40A-206ENST00000471167 PCSK5Q92824 1860 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 FDXRP22570 491 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 GATA3P23771 443 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 MC2RQ01718 297 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 PRR16Q569H4 304 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 ZNF365Q70YC5 407 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 LNX2Q8N448 690 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 SUPT20HQ8NEM7 779 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 NLGN4YQ8NFZ3 816 aaPredicted RBP6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 BBC3Q96PG8 261 aaPredicted RBP6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 BRINP2Q9C0B6 783 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 HOMER2Q9NSB8 354 aa6.58□□□□□ -1.36
PRPF40A-206ENST00000471167 SUN1O94901 812 aa6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 MTHFD1P11586 935 aaKnown RBP6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 PDCP20941 246 aa6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 LPOP22079 712 aaPredicted RBP6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 SPDYE7PQ495Y7 208 aa6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 Q6ZNX1 250 aa6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 PRIMA1Q86XR5 153 aa6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 DNAJC10Q8IXB1 793 aa6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 CPA6Q8N4T0 437 aa6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 SIMC1Q8NDZ2 872 aa6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 R3HDMLQ9H3Y0 253 aa6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 CFAP20Q9Y6A4 193 aaKnown RBP6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 ARHGEF17Q96PE2 2063 aaPredicted RBP6.57□□□□□ -1.36
PRPF40A-206ENST00000471167 A0A1W2PS29 197 aa6.56□□□□□ -1.36
PRPF40A-206ENST00000471167 NUDT3O95989 172 aa6.56□□□□□ -1.36
PRPF40A-206ENST00000471167 RECQLP46063 649 aaPredicted RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms