RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 FAM129CQ86XR2 697 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 TICAM2Q86XR7 235 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 POU5F2Q8N7G0 328 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 CLRN3Q8NCR9 226 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 IGDCC4Q8TDY8 1250 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 COG1Q8WTW3 980 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 STAG1Q8WVM7 1258 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 RILPL2Q969X0 211 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 EVI5LQ96CN4 794 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 WRNIP1Q96S55 665 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 TMEM209Q96SK2 561 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 IDI2Q9BXS1 227 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 TMEM39BQ9GZU3 492 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 MS4A5Q9H3V2 200 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 DLL4Q9NR61 685 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 ARHGAP28Q9P2N2 729 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 PI4KBQ9UBF8 816 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 IRAK3Q9Y616 596 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 ADAMTSL1Q8N6G6 1762 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 MYH2Q9UKX2 1941 aa7.35□□□□□ -1.23
PTCD3-208ENST00000469585 ASTN2O75129 1339 aaPredicted RBP7.34□□□□□ -1.23
PTCD3-208ENST00000469585 MAST2Q6P0Q8 1798 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 MANSC4A6NHS7 340 aaPredicted RBP7.34□□□□□ -1.23
PTCD3-208ENST00000469585 PAX4O43316 350 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 PRKD3O94806 890 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 CD40P25942 277 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 CACNB3P54284 484 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 SESN3P58005 492 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 SSPNQ14714 243 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 RTP5Q14D33 572 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 ARHGEF6Q15052 776 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 ZNF648Q5T619 568 aaPredicted RBP7.34□□□□□ -1.23
PTCD3-208ENST00000469585 PRAMEF18Q5VWM3 479 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 CST9Q5W186 159 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 ATG14Q6ZNE5 492 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 STK32CQ86UX6 486 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 MIGA1Q8NAN2 632 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 KYQ8NBH2 561 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 HIPK4Q8NE63 616 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 BHLHE22Q8NFJ8 381 aaPredicted RBP7.34□□□□□ -1.23
PTCD3-208ENST00000469585 TGFBRAP1Q8WUH2 860 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 RUFY2Q8WXA3 655 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 ZBED3Q96IU2 234 aaPredicted RBP7.34□□□□□ -1.23
PTCD3-208ENST00000469585 PPP1R16BQ96T49 567 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 AMNQ9BXJ7 453 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 TRIM8Q9BZR9 551 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 AS3MTQ9HBK9 375 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 VTA1Q9NP79 307 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 CD320Q9NPF0 282 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 DIAPH3Q9NSV4 1193 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 ATP8A2Q9NTI2 1148 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 UCKL1Q9NWZ5 548 aa7.34□□□□□ -1.23
PTCD3-208ENST00000469585 HERC5Q9UII4 1024 aaKnown RBP7.34□□□□□ -1.23
PTCD3-208ENST00000469585 ZNF532Q9HCE3 1301 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 UBE2Q2LH0YL09 131 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 NFIBO00712 420 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 RNF113AO15541 343 aaKnown RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 IL18BPO95998 194 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 C1QTNF9P0C862 333 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 TDO2P48775 406 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 CTCFP49711 727 aaPredicted RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 GUCY2FP51841 1108 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 ADCY1Q08828 1119 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 UBE3CQ15386 1083 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 ERICH6BQ5W0A0 696 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 IQSEC1Q6DN90 963 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 CENPQQ7L2Z9 268 aaPredicted RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 RASSF3Q86WH2 238 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 KBTBD3Q8NAB2 608 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 ERCC4Q92889 916 aaPredicted RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 PUS7LQ9H0K6 701 aaKnown RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 OSBPL5Q9H0X9 879 aaPredicted RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 PIH1D3Q9NQM4 214 aaKnown RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 INCENPQ9NQS7 918 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 HOMER2Q9NSB8 354 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 TYW1Q9NV66 732 aaKnown RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 MCM9Q9NXL9 1143 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 GALNT8Q9NY28 637 aa7.33□□□□□ -1.24
PTCD3-208ENST00000469585 DDX56Q9NY93 547 aaKnown RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 SCAF8Q9UPN6 1271 aaKnown RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 SMG5Q9UPR3 1016 aaKnown RBP7.33□□□□□ -1.24
PTCD3-208ENST00000469585 K7ESF4 209 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 CTNND1O60716 968 aaKnown RBP7.32□□□□□ -1.24
PTCD3-208ENST00000469585 MBD4O95243 580 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 TSPAN15O95858 294 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 PRLP01236 227 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 CETPP11597 493 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 PI3P19957 117 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 PDE1AP54750 535 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 ALDH6A1Q02252 535 aaKnown RBP7.32□□□□□ -1.24
PTCD3-208ENST00000469585 NUCB1Q02818 461 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 SNAPC2Q13487 334 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 MIGA2Q7L4E1 593 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 ERO1BQ86YB8 467 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 FOXP4Q8IVH2 680 aaPredicted RBP7.32□□□□□ -1.24
PTCD3-208ENST00000469585 MAPKAPK5Q8IW41 473 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 SMC5Q8IY18 1101 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 SH3RF3Q8TEJ3 882 aaPredicted RBP7.32□□□□□ -1.24
PTCD3-208ENST00000469585 FNIP1Q8TF40 1166 aa7.32□□□□□ -1.24
PTCD3-208ENST00000469585 MAML3Q96JK9 1138 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms