RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 PRKCBP05771 671 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 HOXD13P35453 343 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 ARID5AQ03989 594 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 FSCN1Q16658 493 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 CAPRIN2Q6IMN6 1127 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 PDZD4Q76G19 769 aaPredicted RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 SDCCAG8Q86SQ7 713 aaPredicted RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 GPD1LQ8N335 351 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 ATP8B4Q8TF62 1192 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 CLMNQ96JQ2 1002 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 PURBQ96QR8 312 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 WRAP73Q9P2S5 460 aaPredicted RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 SLC12A6Q9UHW9 1150 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 DNAJC12Q9UKB3 198 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 SATB2Q9UPW6 733 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 ZC3H11AO75152 810 aaKnown RBP eCLIP8.14□□□□□ -1.11
USP54-210ENST00000466048 SLC10A3P09131 477 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 DLATP10515 647 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 NPTX2P47972 431 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 KRT17Q04695 432 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 CFAP157Q5JU67 520 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 TREML2Q5T2D2 321 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 ZNF467Q7Z7K2 595 aaPredicted RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 GABPB2Q8TAK5 448 aaPredicted RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 NIFKQ9BYG3 293 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 RABEP2Q9H5N1 569 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 H3BRB1 525 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 TXNDC9O14530 226 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 HUS1O60921 280 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 SEC31AO94979 1220 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 TFAMQ00059 246 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 ELAVL2Q12926 359 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 NAB2Q15742 525 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 ZNF667Q5HYK9 610 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 LGSNQ5TDP6 509 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 PLA2G4FQ68DD2 849 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 KRT39Q6A163 491 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 TRAPPC11Q7Z392 1133 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 CCDC25Q86WR0 208 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 TMEM199Q8N511 208 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 RDH13Q8NBN7 331 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 RNF149Q8NC42 400 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 KCNN1Q92952 543 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 TUT1Q9H6E5 874 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 KANSL3Q9P2N6 904 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 SSX2IPQ9Y2D8 614 aa8.14□□□□□ -1.11
USP54-210ENST00000466048 REXO2Q9Y3B8 237 aaKnown RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 MAFBQ9Y5Q3 323 aaPredicted RBP8.14□□□□□ -1.11
USP54-210ENST00000466048 A0A0A6YYK5 440 aaPredicted RBP8.13□□□□□ -1.11
USP54-210ENST00000466048 GPR25O00155 361 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ZBTB39O15060 712 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 NOL4O94818 638 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ATG7O95352 703 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 CASP4P49662 377 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ATP1A2P50993 1020 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 EIF3BP55884 814 aaKnown RBP8.13□□□□□ -1.11
USP54-210ENST00000466048 CYP27A1Q02318 531 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 VEPH1Q14D04 833 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 HIBCHQ6NVY1 386 aaPredicted RBP8.13□□□□□ -1.11
USP54-210ENST00000466048 ST13P4Q8IZP2 240 aaPredicted RBP8.13□□□□□ -1.11
USP54-210ENST00000466048 CNPY4Q8N129 248 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 DAW1Q8N136 415 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 DHX38Q92620 1227 aaKnown RBP8.13□□□□□ -1.11
USP54-210ENST00000466048 CCDC127Q96BQ5 260 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 BORCS6Q96GS4 357 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ACAP3Q96P50 834 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 FIZ1Q96SL8 496 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 TMEM8AQ9HCN3 771 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 INPP5FQ9Y2H2 1132 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 I3L4J1 428 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 PGK2P07205 417 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 SLC9A1P19634 815 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 EDNRBP24530 442 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 TBXAS1P24557 533 aaPredicted RBP8.13□□□□□ -1.11
USP54-210ENST00000466048 FLT3LGP49771 235 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 PDE6CP51160 858 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ATN1P54259 1190 aaPredicted RBP8.13□□□□□ -1.11
USP54-210ENST00000466048 DEUP1Q05D60 604 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 UGCGQ16739 394 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ANO5Q75V66 913 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 GSTA5Q7RTV2 222 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 USP38Q8NB14 1042 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 TMEM161BQ8NDZ6 487 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 RSPH1Q8WYR4 309 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 CCDC68Q9H2F9 335 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ATP11BQ9Y2G3 1177 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 FHOD1Q9Y613 1164 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 PARP14Q460N5 1801 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 EXTL3O43909 919 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ITGA4P13612 1032 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 GPC3P51654 580 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 NPEPPSP55786 919 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 POLE2P56282 527 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ITIH3Q06033 890 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 GFPT1Q06210 699 aaPredicted RBP8.13□□□□□ -1.11
USP54-210ENST00000466048 PDE1CQ14123 709 aaPredicted RBP8.13□□□□□ -1.11
USP54-210ENST00000466048 DCUN1D2Q6PH85 259 aa8.13□□□□□ -1.11
USP54-210ENST00000466048 ZNF410Q86VK4 478 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms