RNA–Protein interactions for RNA: ENST00000461849.1

RBM39-222, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 861 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-222	ENST00000461849	PANK4	Q9NVE7	773 aa		15.04	■□□□□ -0
RBM39-222	ENST00000461849	CNTN3	Q9P232	1028 aa		15.04	■□□□□ -0
RBM39-222	ENST00000461849	TECTA	O75443	2155 aa		15.04	■□□□□ -0
RBM39-222	ENST00000461849	ABLIM1	O14639	778 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	KLRC4	O43908	158 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	ZMYND10	O75800	440 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	C8A	P07357	584 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	PRR29	P0C7W0	189 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	IDE	P14735	1019 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	FGFR3	P22607	806 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	RPL9	P32969	192 aa	Known RBP	15.03	■□□□□ -0
RBM39-222	ENST00000461849	BRCC3	P46736	316 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	SOX4	Q06945	474 aa	Predicted RBP	15.03	■□□□□ -0
RBM39-222	ENST00000461849	MCL1	Q07820	350 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	EHHADH	Q08426	723 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	PNOC	Q13519	176 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	KYAT1	Q16773	422 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	SEZ6	Q53EL9	994 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	CCDC183	Q5T5S1	534 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	ZMAT2	Q96NC0	199 aa	Known RBP	15.03	■□□□□ -0
RBM39-222	ENST00000461849	PRRX2	Q99811	253 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	ST6GALNAC4	Q9H4F1	302 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	RMND1	Q9NWS8	449 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	FBXW11	Q9UKB1	542 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	TBX20	Q9UMR3	447 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	POLI	Q9UNA4	740 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	CDY1	Q9Y6F8	540 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	C2orf16	Q68DN1	1984 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	MTCL1	Q9Y4B5	1905 aa	Known RBP	15.03	■□□□□ -0
RBM39-222	ENST00000461849	DENND4A	Q7Z401	1863 aa		15.03	■□□□□ -0
RBM39-222	ENST00000461849	TRIP11	Q15643	1979 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849		I3L4J1	428 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	XYLB	O75191	536 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	RHOBTB3	O94955	611 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	RPN1	P04843	607 aa	Known RBP	15.02	■□□□□ -0
RBM39-222	ENST00000461849	HNRNPA1	P09651	372 aa	Known RBP eCLIP	15.02	■□□□□ -0
RBM39-222	ENST00000461849	TKT	P29401	623 aa	Known RBP	15.02	■□□□□ -0
RBM39-222	ENST00000461849	CASP1	P29466	404 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	OR1D2	P34982	312 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	PPP2R3A	Q06190	1150 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	PSMD2	Q13200	908 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	TDG	Q13569	410 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	ALCAM	Q13740	583 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	RBM43	Q6ZSC3	357 aa	Known RBP	15.02	■□□□□ -0
RBM39-222	ENST00000461849	GET4	Q7L5D6	327 aa	Predicted RBP	15.02	■□□□□ -0
RBM39-222	ENST00000461849	C3orf58	Q8NDZ4	430 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	SMARCE1	Q969G3	411 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	ZNF707	Q96C28	371 aa	Predicted RBP	15.02	■□□□□ -0
RBM39-222	ENST00000461849	FIZ1	Q96SL8	496 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	MFSD1	Q9H3U5	465 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	PLEKHA5	Q9HAU0	1116 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	KCNK12	Q9HB15	430 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	EXOC1	Q9NV70	894 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	15.02	■□□□□ -0
RBM39-222	ENST00000461849	IGSF9	Q9P2J2	1179 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	MTRR	Q9UBK8	725 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	PCDHA5	Q9Y5H7	936 aa		15.02	■□□□□ -0
RBM39-222	ENST00000461849	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	15.02	■□□□□ -0
RBM39-222	ENST00000461849	CIT	O14578	2027 aa		15.02	□□□□□ -0.01
RBM39-222	ENST00000461849	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	SYN3	O14994	580 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	XPOT	O43592	962 aa	Known RBP	15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	CLTA	P09496	248 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	CXCL8	P10145	99 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	RAB33A	Q14088	237 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	CAMK4	Q16566	473 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	UVSSA	Q2YD98	709 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	SLC10A6	Q3KNW5	377 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	SFR1	Q86XK3	245 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	SLC7A14	Q8TBB6	771 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	C18orf25	Q96B23	403 aa	Predicted RBP	15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	KIF12	Q96FN5	646 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	MSTO1	Q9BUK6	570 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	RPF1	Q9H9Y2	349 aa	Known RBP	15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	KIAA1468	Q9P260	1216 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	BACE2	Q9Y5Z0	518 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849	MYO10	Q9HD67	2058 aa		15.01	□□□□□ -0.01
RBM39-222	ENST00000461849		H7C4K7	107 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	CCL16	O15467	120 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	ADAM12	O43184	909 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	PAPLN	O95428	1278 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	FSHR	P23945	695 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	IGFBP6	P24592	240 aa	Predicted RBP	15	□□□□□ -0.01
RBM39-222	ENST00000461849	HOXA9	P31269	272 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	ELF1	P32519	619 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	KMT5B	Q4FZB7	885 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	FAM26F	Q5R3K3	315 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	VARS2	Q5ST30	1063 aa	Known RBP	15	□□□□□ -0.01
RBM39-222	ENST00000461849	CD300LG	Q6UXG3	332 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	RTL10	Q7L3V2	364 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	GRASP	Q7Z6J2	395 aa	Predicted RBP	15	□□□□□ -0.01
RBM39-222	ENST00000461849	TRIML1	Q8N9V2	468 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	APPL2	Q8NEU8	664 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	NXPE3	Q969Y0	559 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	HVCN1	Q96D96	273 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	SMOC2	Q9H3U7	446 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	TMEM63C	Q9P1W3	806 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	EPS15L1	Q9UBC2	864 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	FBXL21	Q9UKT6	434 aa		15	□□□□□ -0.01
RBM39-222	ENST00000461849	UBQLN1	Q9UMX0	589 aa	Known RBP	15	□□□□□ -0.01

Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms