RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, human

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-208	ENST00000457745	ASIC2	Q16515	512 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	TRIM60	Q495X7	471 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	SFMBT2	Q5VUG0	894 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	NOTUM	Q6P988	496 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	FBXO46	Q6PJ61	603 aa	Predicted RBP	9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	SCARA5	Q6ZMJ2	495 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	CACNA2D4	Q7Z3S7	1137 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	NOP9	Q86U38	636 aa	Known RBP	9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	SHC3	Q92529	594 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	RABGGTA	Q92696	567 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	PCDHB18P	Q96TA0	734 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	EDEM3	Q9BZQ6	932 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	LACRT	Q9GZZ8	138 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	WNT8A	Q9H1J5	351 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	HAUS4	Q9H6D7	363 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	RPF1	Q9H9Y2	349 aa	Known RBP	9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	TAS2R14	Q9NYV8	317 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	HMGXB4	Q9UGU5	601 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	FBXL5	Q9UKA1	691 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	LHX6	Q9UPM6	363 aa		9.42	□□□□□ -0.9
RIF1-208	ENST00000457745	KIAA0100	Q14667	2235 aa	Known RBP	9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	PTPRS	Q13332	1948 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	TSC2	P49815	1807 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	SPTLC1	O15269	473 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	PQBP1	O60828	265 aa	Known RBP	9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	N4BP1	O75113	896 aa	Known RBP	9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	RPS6KA5	O75582	802 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	NDUFA10	O95299	355 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	ITGB3	P05106	788 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	IBSP	P21815	317 aa	Predicted RBP	9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	ITGB8	P26012	769 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	POLR2B	P30876	1174 aa	Known RBP	9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	ASPA	P45381	313 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	KIF11	P52732	1056 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	NOP14	P78316	857 aa	Known RBP	9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	CDK17	Q00537	523 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	NFX1	Q12986	1120 aa	Known RBP	9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	ORC1	Q13415	861 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	ARHGEF6	Q15052	776 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	NAB2	Q15742	525 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	DCAF4L1	Q3SXM0	396 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	XKR4	Q5GH76	650 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	AGMO	Q6ZNB7	445 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	NYAP1	Q6ZVC0	841 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	TMTC1	Q8IUR5	882 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	PPM1K	Q8N3J5	372 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	CCDC112	Q8NEF3	446 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	SCLY	Q96I15	445 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	ACAP3	Q96P50	834 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	TWNK	Q96RR1	684 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	FNBP1	Q96RU3	617 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	LPIN3	Q9BQK8	851 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	STK33	Q9BYT3	514 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	SMYD3	Q9H7B4	428 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	KCND1	Q9NSA2	647 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	HCST	Q9UBK5	93 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	SALL4	Q9UJQ4	1053 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	NOCT	Q9UK39	431 aa	Known RBP	9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	PCDHB2	Q9Y5E7	798 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745	DUSP10	Q9Y6W6	482 aa		9.41	□□□□□ -0.9
RIF1-208	ENST00000457745		F8W810	466 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	CYP26A1	O43174	497 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	IL18RAP	O95256	599 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	MLH1	P40692	756 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	PRKCI	P41743	596 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	KCNJ6	P48051	423 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	GATM	P50440	423 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	CDH8	P55286	799 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	TLE2	Q04725	743 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	FAAP100	Q0VG06	881 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	CUL2	Q13617	745 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	TMEM132D	Q14C87	1099 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	CCDC142	Q17RM4	750 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	LRRC26	Q2I0M4	334 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	TAF3	Q5VWG9	929 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	CD300LG	Q6UXG3	332 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	CYP26C1	Q6V0L0	522 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	SLC39A5	Q6ZMH5	540 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	ZNF598	Q86UK7	904 aa	Known RBP	9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	SLC47A2	Q86VL8	602 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	FAM71A	Q8IYT1	594 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	SLC30A5	Q8TAD4	765 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	WHAMM	Q8TF30	809 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	DDX1	Q92499	740 aa	Known RBP	9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	SYN2	Q92777	582 aa	Predicted RBP	9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	NT5C1B	Q96P26	610 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	PAAF1	Q9BRP4	392 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	FAM105A	Q9NUU6	356 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	CNTN3	Q9P232	1028 aa		9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	EPN1	Q9Y6I3	576 aa	Predicted RBP	9.4	□□□□□ -0.9
RIF1-208	ENST00000457745	TDRD15	B5MCY1	1934 aa	Known RBP	9.39	□□□□□ -0.91
RIF1-208	ENST00000457745	SMIM28	A0A1B0GU29	152 aa		9.39	□□□□□ -0.91
RIF1-208	ENST00000457745	DPYSL4	O14531	572 aa		9.39	□□□□□ -0.91
RIF1-208	ENST00000457745	LCA5L	O95447	670 aa		9.39	□□□□□ -0.91
RIF1-208	ENST00000457745	TFRC	P02786	760 aa	Known RBP	9.39	□□□□□ -0.91
RIF1-208	ENST00000457745	SERPING1	P05155	500 aa		9.39	□□□□□ -0.91
RIF1-208	ENST00000457745	WEE2	P0C1S8	567 aa		9.39	□□□□□ -0.91
RIF1-208	ENST00000457745	TMEM191B	P0C7N4	346 aa		9.39	□□□□□ -0.91
RIF1-208	ENST00000457745	CYP3A5	P20815	502 aa		9.39	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms