RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 STRA6Q9BX79 667 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 RPF1Q9H9Y2 349 aaKnown RBP22.59■■□□□ 1.21
SDC1-205ENST00000447124 STK17AQ9UEE5 414 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 CPSF3Q9UKF6 684 aaKnown RBP22.59■■□□□ 1.21
SDC1-205ENST00000447124 UBQLN1Q9UMX0 589 aaKnown RBP22.59■■□□□ 1.21
SDC1-205ENST00000447124 H7C4K7 107 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 PI15O43692 258 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 XYLBO75191 536 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 CYP3A5P20815 502 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 PTPN5P54829 565 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 KYAT1Q16773 422 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 CWF19L1Q69YN2 538 aaKnown RBP22.58■■□□□ 1.21
SDC1-205ENST00000447124 ASTLQ6HA08 431 aaPredicted RBP22.58■■□□□ 1.21
SDC1-205ENST00000447124 RTL10Q7L3V2 364 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 SFR1Q86XK3 245 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 FGF13Q92913 245 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 SNX21Q969T3 373 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 ZSCAN16Q9H4T2 348 aaPredicted RBP22.58■■□□□ 1.21
SDC1-205ENST00000447124 CDH7Q9ULB5 785 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 PCDHB8Q9UN66 801 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 STYXL1Q9Y6J8 313 aa22.58■■□□□ 1.21
SDC1-205ENST00000447124 ARHGEF37A1IGU5 675 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 M0QZQ0 153 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 PPEF2O14830 753 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 PPP1R37O75864 691 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 CFHP08603 1231 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 ATF2P15336 505 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 NASPP49321 788 aaPredicted RBP22.57■■□□□ 1.2
SDC1-205ENST00000447124 PPP2R3AQ06190 1150 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 CTXN3Q4LDR2 81 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 PARM1Q6UWI2 310 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 SV2BQ7L1I2 683 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 TFIP11Q9UBB9 837 aaKnown RBP22.57■■□□□ 1.2
SDC1-205ENST00000447124 WNT16Q9UBV4 365 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 TIMM13Q9Y5L4 95 aaPredicted RBP22.57■■□□□ 1.2
SDC1-205ENST00000447124 ZFP37Q9Y6Q3 630 aaPredicted RBP22.57■■□□□ 1.2
SDC1-205ENST00000447124 NUMBLQ9Y6R0 609 aa22.57■■□□□ 1.2
SDC1-205ENST00000447124 PDCD11Q14690 1871 aaKnown RBP22.56■■□□□ 1.2
SDC1-205ENST00000447124 KRBA1A5PL33 1030 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 AARSP49588 968 aaKnown RBP eCLIP22.56■■□□□ 1.2
SDC1-205ENST00000447124 ACOT2P49753 483 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 CLCN5P51795 746 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 KCNA1Q09470 495 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 SPATA1Q5VX52 437 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 JADE1Q6IE81 842 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 TCEAL8Q8IYN2 117 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 SIX5Q8N196 739 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 LINC00301Q8NCQ3 95 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 APPL2Q8NEU8 664 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 FLCNQ8NFG4 579 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 FGF14Q92915 247 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 FAM212AQ96EL1 285 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 MFSD1Q9H3U5 465 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 TBC1D7Q9P0N9 293 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 FBXL21Q9UKT6 434 aa22.56■■□□□ 1.2
SDC1-205ENST00000447124 OAZ2O95190 189 aa22.55■■□□□ 1.2
SDC1-205ENST00000447124 SRFP11831 508 aa22.55■■□□□ 1.2
SDC1-205ENST00000447124 ADSSP30520 456 aa22.55■■□□□ 1.2
SDC1-205ENST00000447124 ELF1P32519 619 aa22.55■■□□□ 1.2
SDC1-205ENST00000447124 MRE11P49959 708 aa22.55■■□□□ 1.2
SDC1-205ENST00000447124 PABPC1LQ4VXU2 614 aaKnown RBP22.55■■□□□ 1.2
SDC1-205ENST00000447124 ADALQ6DHV7 355 aa22.55■■□□□ 1.2
SDC1-205ENST00000447124 CRELD2Q6UXH1 353 aaPredicted RBP22.55■■□□□ 1.2
SDC1-205ENST00000447124 CYP4F11Q9HBI6 524 aa22.55■■□□□ 1.2
SDC1-205ENST00000447124 GALR2O43603 387 aaPredicted RBP22.54■■□□□ 1.2
SDC1-205ENST00000447124 RHOP08100 348 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 NFICP08651 508 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 NUBP1P53384 320 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 SLC5A9Q2M3M2 681 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 TPGS2Q68CL5 300 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 ZNF280DQ6N043 979 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 CCDC73Q6ZRK6 1079 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 CD302Q8IX05 232 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 TSPAN18Q96SJ8 248 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 AGO2Q9UKV8 859 aaKnown RBP22.54■■□□□ 1.2
SDC1-205ENST00000447124 KCNH3Q9ULD8 1083 aa22.54■■□□□ 1.2
SDC1-205ENST00000447124 H0Y858 1186 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 NRG2O14511 850 aaPredicted RBP22.53■■□□□ 1.2
SDC1-205ENST00000447124 PRRG1O14668 218 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 SPTLC1O15269 473 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 VNN2O95498 520 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 PTPN2P17706 415 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 ABCD1P33897 745 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 TXLNAP40222 546 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 GPC5P78333 572 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 SLFN12LQ6IEE8 588 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 RNF19BQ6ZMZ0 732 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 NPAS3Q8IXF0 933 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 GPR152Q8TDT2 470 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 ING5Q8WYH8 240 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 FGFBP2Q9BYJ0 223 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 MRPL44Q9H9J2 332 aaKnown RBP22.53■■□□□ 1.2
SDC1-205ENST00000447124 AVENQ9NQS1 362 aaPredicted RBP22.53■■□□□ 1.2
SDC1-205ENST00000447124 FAM86C1Q9NVL1 165 aa22.53■■□□□ 1.2
SDC1-205ENST00000447124 AFF4Q9UHB7 1163 aaKnown RBP22.53■■□□□ 1.2
SDC1-205ENST00000447124 MRPS23Q9Y3D9 190 aaKnown RBP22.53■■□□□ 1.2
SDC1-205ENST00000447124 PIRO00625 290 aa22.52■■□□□ 1.2
SDC1-205ENST00000447124 XPOTO43592 962 aaKnown RBP22.52■■□□□ 1.2
SDC1-205ENST00000447124 OR4Q2P0C623 313 aa22.52■■□□□ 1.2
SDC1-205ENST00000447124 AOC1P19801 751 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms