RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 RAD23BP54727 409 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 MED21Q13503 144 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 C10orf120Q5SQS8 335 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 EFCAB12Q6NXP0 572 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 SEPT1Q8WYJ6 367 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 TRIM51Q9BSJ1 452 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 KRT87PA6NCN2 255 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 DGAT1O75907 488 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 FKBP9O95302 570 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 NPTXRO95502 500 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 SLC1A1P43005 524 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 HNRNPH2P55795 449 aaKnown RBP16.15■□□□□ 0.18
PTPRF-206ENST00000429895 FOXO4P98177 505 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 MFSD4BQ5TF39 518 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 FKBP9P1Q75LS8 142 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ATL2Q8NHH9 583 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ZMAT2Q96NC0 199 aaKnown RBP16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ZNF70Q9UC06 446 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-206ENST00000429895 WDR19Q8NEZ3 1342 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ORC4O43929 436 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 TFRCP02786 760 aaKnown RBP16.15■□□□□ 0.18
PTPRF-206ENST00000429895 SNRNP35Q16560 246 aaKnown RBP16.15■□□□□ 0.18
PTPRF-206ENST00000429895 SHCBP1Q8NEM2 672 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 PDXKO00764 312 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 WEE2P0C1S8 567 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ALDH1A3P47895 512 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 PRKCEQ02156 737 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 DCAF6Q58WW2 860 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 IFNEQ86WN2 208 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ATP6V1G3Q96LB4 118 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 GPR63Q9BZJ6 419 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ZSCAN32Q9NX65 697 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 APEX2Q9UBZ4 518 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ZC3H7BQ9UGR2 993 aaKnown RBP16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ARHGAP26Q9UNA1 814 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 FLT1P17948 1338 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ENO3P13929 434 aaPredicted RBP16.14■□□□□ 0.18
PTPRF-206ENST00000429895 DHX34Q14147 1143 aaKnown RBP16.14■□□□□ 0.18
PTPRF-206ENST00000429895 LONRF1Q17RB8 773 aa16.14■□□□□ 0.18
PTPRF-206ENST00000429895 ATF7IP2Q5U623 682 aa16.14■□□□□ 0.18
PTPRF-206ENST00000429895 GLB1LQ6UWU2 654 aa16.14■□□□□ 0.18
PTPRF-206ENST00000429895 BPIFA3Q9BQP9 254 aa16.14■□□□□ 0.18
PTPRF-206ENST00000429895 RAD18Q9NS91 495 aa16.14■□□□□ 0.18
PTPRF-206ENST00000429895 CCL15-CCL14A0A0B4J2E2 113 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 NDUFB10O96000 172 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 IMPDH2P12268 514 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 CCL15Q16663 113 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 SGSM1Q2NKQ1 1148 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 CCDC144BQ3MJ40 725 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 ADGRG1Q9Y653 693 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 MYO5CQ9NQX4 1742 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 hCG_2014768A0A024R1R8 64 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 TARSL2A2RTX5 802 aaKnown RBP16.14■□□□□ 0.17
PTPRF-206ENST00000429895 TCP11X1B4DZS4 312 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 PSMD3O43242 534 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 HIC1Q14526 733 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 SMTNL2Q2TAL5 461 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 ZC2HC1CQ53FD0 456 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-206ENST00000429895 RARS2Q5T160 578 aaKnown RBP16.14■□□□□ 0.17
PTPRF-206ENST00000429895 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.14■□□□□ 0.171e-7■□□□□ 8.6
PTPRF-206ENST00000429895 ZNF555Q8NEP9 628 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 NAGPAQ9UK23 515 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 FAM205CA6NFA0 338 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 HSPA9P38646 679 aaKnown RBP16.14■□□□□ 0.17
PTPRF-206ENST00000429895 ABCE1P61221 599 aaKnown RBP16.14■□□□□ 0.17
PTPRF-206ENST00000429895 SV2CQ496J9 727 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 FAM162AQ96A26 154 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 NSUN4Q96CB9 384 aaKnown RBP16.14■□□□□ 0.17
PTPRF-206ENST00000429895 SMAD5Q99717 465 aaKnown RBP16.14■□□□□ 0.17
PTPRF-206ENST00000429895 C17orf80Q9BSJ5 609 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 OSBPL1AQ9BXW6 950 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 NPHS2Q9NP85 383 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 MTMR4Q9NYA4 1195 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 CYP2C9P11712 490 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 INPP5AQ14642 412 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 MTF1Q14872 753 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 TSPAN17Q96FV3 270 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 WWP1Q9H0M0 922 aa16.14■□□□□ 0.17
PTPRF-206ENST00000429895 CELF2O95319 508 aaKnown RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 RALBP11234 206 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 PGM1P36871 562 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 PLEKHM3Q6ZWE6 761 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 IL1RL2Q9HB29 575 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 ADAM21Q9UKJ8 722 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 AKAP10O43572 662 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 CD4P01730 458 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 CDC42EP1Q00587 391 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 ALX1Q15699 326 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 AMHR2Q16671 573 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 LRRC36Q1X8D7 754 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 DCP1BQ8IZD4 617 aaKnown RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 NCAPD2Q15021 1401 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 PSMD14O00487 310 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 SLC16A3O15427 465 aaKnown RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 ATMINO43313 823 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 NPM3O75607 178 aaKnown RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 HARS2P49590 506 aaKnown RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 RCAN1P53805 252 aa16.13■□□□□ 0.17
PTPRF-206ENST00000429895 TMED8Q6PL24 325 aaPredicted RBP16.13■□□□□ 0.17
PTPRF-206ENST00000429895 FAM180AQ6UWF9 173 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 201 ms