RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 CLCN6P51797 869 aa28.37■■■□□ 2.13
LDB1-202ENST00000425280 ZNF132P52740 706 aa28.37■■■□□ 2.13
LDB1-202ENST00000425280 PRKCZQ05513 592 aa28.37■■■□□ 2.13
LDB1-202ENST00000425280 C2orf54Q08AI8 447 aa28.37■■■□□ 2.13
LDB1-202ENST00000425280 CATSPER4Q7RTX7 472 aa28.37■■■□□ 2.13
LDB1-202ENST00000425280 C1orf127Q8N9H9 656 aa28.37■■■□□ 2.13
LDB1-202ENST00000425280 TAF4BQ92750 862 aa28.37■■■□□ 2.13
LDB1-202ENST00000425280 RNF14Q9UBS8 474 aa28.37■■■□□ 2.13
LDB1-202ENST00000425280 UNGP13051 313 aaPredicted RBP28.36■■■□□ 2.13
LDB1-202ENST00000425280 HOXC8P31273 242 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 GJA9P57773 515 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 ITIH3Q06033 890 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 TMEM130Q8N3G9 435 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 ACAP3Q96P50 834 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 MROH7Q68CQ1 1323 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 ATMINO43313 823 aaPredicted RBP28.36■■■□□ 2.13
LDB1-202ENST00000425280 CYP1A2P05177 515 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 GNA15P30679 374 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 PAFAH1B1P43034 410 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 CAP1Q01518 475 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 DCAF4L1Q3SXM0 396 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 PNKPQ96T60 521 aa28.36■■■□□ 2.13
LDB1-202ENST00000425280 ARGLU1Q9NWB6 273 aaPredicted RBP28.36■■■□□ 2.13
LDB1-202ENST00000425280 NPTXRO95502 500 aa28.35■■■□□ 2.13
LDB1-202ENST00000425280 GRM5P41594 1212 aa28.35■■■□□ 2.13
LDB1-202ENST00000425280 ASPAP45381 313 aa28.35■■■□□ 2.13
LDB1-202ENST00000425280 CFAP221Q4G0U5 840 aa28.35■■■□□ 2.13
LDB1-202ENST00000425280 C7orf31Q8N865 590 aa28.35■■■□□ 2.13
LDB1-202ENST00000425280 SPATA4Q8NEY3 305 aa28.35■■■□□ 2.13
LDB1-202ENST00000425280 ZNF653Q96CK0 615 aa28.35■■■□□ 2.13
LDB1-202ENST00000425280 CALR3Q96L12 384 aaKnown RBP28.35■■■□□ 2.13
LDB1-202ENST00000425280 CHORDC1Q9UHD1 332 aaPredicted RBP28.35■■■□□ 2.13
LDB1-202ENST00000425280 GTF3C4Q9UKN8 822 aa28.35■■■□□ 2.13
LDB1-202ENST00000425280 AMFRQ9UKV5 643 aa28.35■■■□□ 2.13
LDB1-202ENST00000425280 CES2O00748 559 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 KCNK3O14649 394 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 KPNA6O60684 536 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 KRT19P08727 400 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 TRIM32Q13049 653 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 CXorf38Q8TB03 319 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 HES6Q96HZ4 224 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 CISHQ9NSE2 258 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 MTA2O94776 668 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 CYP1A1P04798 512 aaPredicted RBP28.34■■■□□ 2.13
LDB1-202ENST00000425280 EIF4BP23588 611 aaKnown RBP28.34■■■□□ 2.13
LDB1-202ENST00000425280 PCBP1Q15365 356 aaKnown RBP eCLIP28.34■■■□□ 2.132e-9■■■■■ 29.1
LDB1-202ENST00000425280 GNASQ5JWF2 1037 aa28.34■■■□□ 2.13
LDB1-202ENST00000425280 UPF3AQ9H1J1 476 aaKnown RBP28.34■■■□□ 2.13
LDB1-202ENST00000425280 CFHP08603 1231 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 CD58P19256 250 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 TMEM132DQ14C87 1099 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 SLC27A1Q6PCB7 646 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 PBKQ96KB5 322 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 RAB21Q9UL25 225 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 TOMM70O94826 608 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 ITGB3P05106 788 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 GNAT1P11488 350 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 SNX17Q15036 470 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 SCARA5Q6ZMJ2 495 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 MMGT1Q8N4V1 131 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 TMEM40Q8WWA1 233 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 CPA5Q8WXQ8 436 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 CYFIP2Q96F07 1278 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 CAPNS2Q96L46 248 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 MTG1Q9BT17 334 aaPredicted RBP28.33■■■□□ 2.13
LDB1-202ENST00000425280 POLIQ9UNA4 740 aa28.33■■■□□ 2.13
LDB1-202ENST00000425280 CITO14578 2027 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 THAP12O43422 761 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 PGK1P00558 417 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 WEE2P0C1S8 567 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 C11orf63Q6NUN7 778 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 NOTUMQ6P988 496 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 TRIM72Q6ZMU5 477 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 APBB1IPQ7Z5R6 666 aaPredicted RBP28.32■■■□□ 2.12
LDB1-202ENST00000425280 NUP85Q9BW27 656 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 CCDC94Q9BW85 323 aaPredicted RBP28.32■■■□□ 2.12
LDB1-202ENST00000425280 EIF2AQ9BY44 585 aaKnown RBP28.32■■■□□ 2.12
LDB1-202ENST00000425280 PDCL3Q9H2J4 239 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 RNF216Q9NWF9 866 aaPredicted RBP28.32■■■□□ 2.12
LDB1-202ENST00000425280 NXF1Q9UBU9 619 aaKnown RBP28.32■■■□□ 2.12
LDB1-202ENST00000425280 C2CD2Q9Y426 696 aa28.32■■■□□ 2.12
LDB1-202ENST00000425280 SEPT4O43236 478 aa28.31■■■□□ 2.12
LDB1-202ENST00000425280 CENPCQ03188 943 aa28.31■■■□□ 2.12
LDB1-202ENST00000425280 CACNB2Q08289 660 aaPredicted RBP28.31■■■□□ 2.12
LDB1-202ENST00000425280 NAA35Q5VZE5 725 aa28.31■■■□□ 2.12
LDB1-202ENST00000425280 MCOLN2Q8IZK6 566 aa28.31■■■□□ 2.12
LDB1-202ENST00000425280 ZNF446Q9NWS9 450 aa28.31■■■□□ 2.12
LDB1-202ENST00000425280 CNOT8Q9UFF9 292 aaKnown RBP28.31■■■□□ 2.12
LDB1-202ENST00000425280 SSTR3P32745 418 aaPredicted RBP28.3■■■□□ 2.12
LDB1-202ENST00000425280 DEFB115Q30KQ5 88 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 ZNF667Q5HYK9 610 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 CXCL17Q6UXB2 119 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 CD302Q8IX05 232 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 NME8Q8N427 588 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 ZNF564Q8TBZ8 553 aaPredicted RBP28.3■■■□□ 2.12
LDB1-202ENST00000425280 BCO2Q9BYV7 579 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 UVRAGQ9P2Y5 699 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 CASP8AP2Q9UKL3 1982 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 GUCY2FP51841 1108 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 SP3Q02447 781 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms