RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 YARSP54577 528 aaKnown RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 PGM5Q15124 567 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 SLC7A5P1Q8MH63 180 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 RBBP8NLQ8NC74 664 aaPredicted RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 PSPC1Q8WXF1 523 aaKnown RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 PTPRN2Q92932 1015 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 NMD3Q96D46 503 aaKnown RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 MACROD2A1Z1Q3 448 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 HBP1O60381 514 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 NOVP48745 357 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 CD97P48960 835 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 SERPINB8P50452 374 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 PEX5P50542 639 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 UBXN1Q04323 297 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 MTF1Q14872 753 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 DGKDQ16760 1214 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 PRPF31Q8WWY3 499 aaKnown RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 STMN4Q9H169 189 aaPredicted RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 NDST4Q9H3R1 872 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 NFIBO00712 420 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 SPTLC1O15269 473 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 SRGAP2O75044 1071 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 GNRH1P01148 92 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 ITGA2BP08514 1039 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 IL4RP24394 825 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 HSD17B4P51659 736 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 TSPY1Q01534 308 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 ST3GAL1Q11201 340 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 SLC2A7Q6PXP3 512 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 P2RX5Q93086 422 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 SNX27Q96L92 541 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 SENP7Q9BQF6 1050 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 NOVA2Q9UNW9 492 aaKnown RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 AKT3Q9Y243 479 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 ARHGEF37A1IGU5 675 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 GALK1P51570 392 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 INHBCP55103 352 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 FKBP3Q00688 224 aaKnown RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 TNFAIP2Q03169 654 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 SWSAP1Q6NVH7 229 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 C6orf89Q6UWU4 347 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 TRIM67Q6ZTA4 783 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 ENOX1Q8TC92 643 aaKnown RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 SLC35B4Q969S0 331 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 NACC2Q96BF6 587 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 TUBGCP5Q96RT8 1024 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 PLVAPQ9BX97 442 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 ERAP1Q9NZ08 941 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 KLHL14Q9P2G3 628 aa10.37□□□□□ -0.75
USP54-205ENST00000424265 ARMCX3Q9UH62 379 aaPredicted RBP10.37□□□□□ -0.75
USP54-205ENST00000424265 GOLGA8TH3BQL2 631 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 MSH4O15457 936 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 ETS2P15036 469 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 HIRAP54198 1017 aaPredicted RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 COPS2P61201 443 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 MORC3Q14149 939 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 BTG3Q14201 252 aaPredicted RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 PTPAQ15257 358 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 SHC4Q6S5L8 630 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 TTC39CQ8N584 583 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 C7orf25Q9BPX7 421 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 HAUS4Q9H6D7 363 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 PGAP2Q9UHJ9 254 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 LNPEPQ9UIQ6 1025 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 TTLL13PA6NNM8 815 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 MSCO60682 206 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 XRCC5P13010 732 aaKnown RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 HSPA9P38646 679 aaKnown RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 TRPC3Q13507 836 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 MXD4Q14582 209 aaPredicted RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 METTL7BQ6UX53 244 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 ANO5Q75V66 913 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 SLC51AQ86UW1 340 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 SUN5Q8TC36 379 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 AENQ8WTP8 325 aaKnown RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 IRF2BPLQ9H1B7 796 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 MAN1B1Q9UKM7 699 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 DIS3Q9Y2L1 958 aaKnown RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 ASTN2O75129 1339 aaPredicted RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 NFASCO94856 1347 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 KBTBD13C9JR72 458 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 ATF7P17544 494 aaPredicted RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 CYP2B6P20813 491 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 PHEXP78562 749 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 DHX9Q08211 1270 aaKnown RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 PSMD6Q15008 389 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 PDCD4Q53EL6 469 aaKnown RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 TDRD12Q587J7 1177 aaKnown RBP10.36□□□□□ -0.75
USP54-205ENST00000424265 NAALADL2Q58DX5 795 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 IQSEC1Q6DN90 963 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 ANKRD13BQ86YJ7 626 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 C7orf31Q8N865 590 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 DDHD1Q8NEL9 900 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 THAP9Q9H5L6 903 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 GOLGA8CPA6NN73 597 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 MCF2LO15068 1137 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 CASP14P31944 242 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 SNX16P57768 344 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 NDUFA5Q16718 116 aa10.36□□□□□ -0.75
USP54-205ENST00000424265 EMC10Q5UCC4 262 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms