RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 NCOA4Q13772 614 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 BMS1Q14692 1282 aaKnown RBP9.12□□□□□ -0.95
TRIM48-201ENST00000417545 RASIP1Q5U651 963 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 PRPF38BQ5VTL8 546 aaKnown RBP9.12□□□□□ -0.95
TRIM48-201ENST00000417545 TDRD10Q5VZ19 366 aaKnown RBP9.12□□□□□ -0.95
TRIM48-201ENST00000417545 ALKAL1Q6UXT8 129 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 SV2AQ7L0J3 742 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 ZNF280BQ86YH2 543 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 COLGALT1Q8NBJ5 622 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 PLEKHO2Q8TD55 490 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 HASPINQ8TF76 798 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 ANP32BQ92688 251 aaKnown RBP9.12□□□□□ -0.95
TRIM48-201ENST00000417545 SLC35C1Q96A29 364 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 ZNF689Q96CS4 500 aaPredicted RBP9.12□□□□□ -0.95
TRIM48-201ENST00000417545 MMS19Q96T76 1030 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 TRIM5Q9C035 493 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 DNAI2Q9GZS0 605 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 RBSNQ9H1K0 784 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 NKX2-4Q9H2Z4 354 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 NRDE2Q9H7Z3 1164 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 SLC28A3Q9HAS3 691 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 GCNT4Q9P109 453 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 DNAJB4Q9UDY4 337 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 LIMA1Q9UHB6 759 aaKnown RBP9.12□□□□□ -0.95
TRIM48-201ENST00000417545 MTUS1Q9ULD2 1270 aa9.12□□□□□ -0.95
TRIM48-201ENST00000417545 SF3B1O75533 1304 aaKnown RBP eCLIP9.11□□□□□ -0.95
TRIM48-201ENST00000417545 PTPRJQ12913 1337 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 A0A1W2PPC1 479 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 NT5C1B-RDH14C9J2C7 533 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 NRP1O14786 923 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 P4HA2O15460 535 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 LPXNO60711 386 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 HUS1O60921 280 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 DDHD2O94830 711 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 ATP1A3P13637 1013 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 ZNF18P17022 549 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 PAX3P23760 479 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 LRPAP1P30533 357 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 SLC11A1P49279 550 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 ELAVL2Q12926 359 aaKnown RBP9.11□□□□□ -0.95
TRIM48-201ENST00000417545 EXOC3L4Q17RC7 722 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 SGSM1Q2NKQ1 1148 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 ZACNQ401N2 412 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 ZNF667Q5HYK9 610 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 C9orf57Q5W0N0 161 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 DCLRE1AQ6PJP8 1040 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 KCNT2Q6UVM3 1135 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 METTL23Q86XA0 190 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 IRF2BP1Q8IU81 584 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 COLGALT2Q8IYK4 626 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 LRRC52Q8N7C0 313 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 C1orf127Q8N9H9 656 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 RABGGTAQ92696 567 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 TAF4BQ92750 862 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 HPDLQ96IR7 371 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 FAM84AQ96KN4 292 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 SAMD11Q96NU1 681 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 NT5C1BQ96P26 610 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 TGS1Q96RS0 853 aaKnown RBP9.11□□□□□ -0.95
TRIM48-201ENST00000417545 CXCL16Q9H2A7 254 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.11□□□□□ -0.95
TRIM48-201ENST00000417545 RAB20Q9NX57 234 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 SPG21Q9NZD8 308 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 IFNKQ9P0W0 207 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 NXF1Q9UBU9 619 aaKnown RBP9.11□□□□□ -0.95
TRIM48-201ENST00000417545 COL4A6Q14031 1691 aa9.11□□□□□ -0.95
TRIM48-201ENST00000417545 LCHNA4D1U4 455 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 LINC01553A4QN01 128 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 LGALS16A8MUM7 142 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 MEFVO15553 781 aaPredicted RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 CSPG5O95196 566 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 C4BPAP04003 597 aaKnown RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 TPM1P09493 284 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 ODC1P11926 461 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 MYOGP15173 224 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 DNAJB2P25686 324 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 ATICP31939 592 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 PBX3P40426 434 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 MYL6P60660 151 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 YWHAEP62258 255 aaKnown RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 SOX4Q06945 474 aaPredicted RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 DSC1Q08554 894 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 LRMPQ12912 555 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 UVSSAQ2YD98 709 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 WDR72Q3MJ13 1102 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 CBWD6Q4V339 395 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 CBWD3Q5JTY5 395 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 CBWD5Q5RIA9 395 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 FAM109BQ6ICB4 259 aaPredicted RBP9.1□□□□□ -0.95
TRIM48-201ENST00000417545 KIAA1841Q6NSI8 718 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 SCARA5Q6ZMJ2 495 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 GAS2L3Q86XJ1 694 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 CEP57Q86XR8 500 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 DRC7Q8IY82 874 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 CRIPAKQ8N1N5 446 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 GSTCDQ8NEC7 633 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 FBXO22Q8NEZ5 403 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 NEK11Q8NG66 645 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 TAS1R2Q8TE23 839 aa9.1□□□□□ -0.95
TRIM48-201ENST00000417545 ZNF516Q92618 1163 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms