RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 METTL7BQ6UX53 244 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 TAS2R42Q7RTR8 314 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 C1orf54Q8WWF1 131 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 TMEM169Q96HH4 297 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 ERGIC2Q96RQ1 377 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 INTUQ9ULD6 942 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 SH3BP1Q9Y3L3 701 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 ALDH7A1P49419 539 aaKnown RBP18.19■□□□□ 0.5
PHRF1-202ENST00000413872 STAT4Q14765 748 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 SNCBQ16143 134 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 UGP2Q16851 508 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 C4orf19Q8IY42 314 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 KIRREL3Q8IZU9 778 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 PDCD2LQ9BRP1 358 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 RSAD1Q9HA92 442 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 LUC7L3O95232 432 aaKnown RBP18.19■□□□□ 0.5
PHRF1-202ENST00000413872 IMPG1Q17R60 797 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 DCUN1D1Q96GG9 259 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 TSSK1BQ9BXA7 367 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 MRPL40Q9NQ50 206 aaKnown RBP18.19■□□□□ 0.5
PHRF1-202ENST00000413872 HACD3Q9P035 362 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.19■□□□□ 0.56e-7■■■■□ 22.1
PHRF1-202ENST00000413872 ZC3H11AO75152 810 aaKnown RBP eCLIP18.18■□□□□ 0.5
PHRF1-202ENST00000413872 SESN3P58005 492 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 EEF2KO00418 725 aaKnown RBP18.18■□□□□ 0.5
PHRF1-202ENST00000413872 SLC2A3P11169 496 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 GRB10Q13322 594 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 KLHDC7AQ5VTJ3 777 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 MPZL3Q6UWV2 235 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 RASGRP2Q7LDG7 609 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 SLC30A5Q8TAD4 765 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 N4BP2L2Q92802 583 aaPredicted RBP18.18■□□□□ 0.5
PHRF1-202ENST00000413872 MCEEQ96PE7 176 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 EGFL8Q99944 293 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 PDK1Q15118 436 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 SPATA4Q8NEY3 305 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 SPDL1Q96EA4 605 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 TRAIPQ9BWF2 469 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 SARS2Q9NP81 518 aaKnown RBP18.18■□□□□ 0.5
PHRF1-202ENST00000413872 ZFATQ9P243 1243 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 OPHN1O60890 802 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 TYK2P29597 1187 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 HERVK_113P62684 666 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 ARHGAP15Q53QZ3 475 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 SYTL5Q8TDW5 730 aaPredicted RBP18.18■□□□□ 0.5
PHRF1-202ENST00000413872 PPCSQ9HAB8 311 aa18.18■□□□□ 0.5
PHRF1-202ENST00000413872 KCNN4O15554 427 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 SLC9A1P19634 815 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 GPD1P21695 349 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 GPAT2Q6NUI2 795 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 TBC1D1Q86TI0 1168 aaPredicted RBP18.17■□□□□ 0.5
PHRF1-202ENST00000413872 ARHGEF26Q96DR7 871 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 DPP3Q9NY33 737 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 GTSE1Q9NYZ3 720 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.17■□□□□ 0.54e-6■□□□□ 11
PHRF1-202ENST00000413872 UBA6A0AVT1 1052 aaPredicted RBP18.17■□□□□ 0.5
PHRF1-202ENST00000413872 SMIM24O75264 130 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 POU5F1BQ06416 359 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 FBXO38Q6PIJ6 1188 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 USP50Q70EL3 339 aaPredicted RBP18.17■□□□□ 0.5
PHRF1-202ENST00000413872 MRIQ9BWK5 157 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 IL25Q9H293 177 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 ESRRBO95718 433 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 MDM2Q00987 491 aaPredicted RBP18.17■□□□□ 0.5
PHRF1-202ENST00000413872 FAM49BQ9NUQ9 324 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 NDFIP2Q9NV92 336 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 PHF2O75151 1096 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 PNMA6AP0CW24 399 aaPredicted RBP18.17■□□□□ 0.5
PHRF1-202ENST00000413872 SHMT1P34896 483 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 MYBPC2Q14324 1141 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 DACT2Q5SW24 774 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 CYTH2Q99418 400 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 G3BP2Q9UN86 482 aaKnown RBP18.17■□□□□ 0.5
PHRF1-202ENST00000413872 MRFAP1Q9Y605 127 aa18.17■□□□□ 0.5
PHRF1-202ENST00000413872 PI4K2BG5E9Z4 385 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 ATP5HO75947 161 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 ATP1A1P05023 1023 aaKnown RBP18.16■□□□□ 0.5
PHRF1-202ENST00000413872 HARS2P49590 506 aaKnown RBP18.16■□□□□ 0.5
PHRF1-202ENST00000413872 NIPA1Q7RTP0 329 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 MYO1DO94832 1006 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 DDNO94850 711 aaPredicted RBP18.16■□□□□ 0.5
PHRF1-202ENST00000413872 SSTR3P32745 418 aaPredicted RBP18.16■□□□□ 0.5
PHRF1-202ENST00000413872 IL1RL1Q01638 556 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 CCDC15Q0P6D6 951 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 GOLGA7BQ2TAP0 167 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 C15orf52Q6ZUT6 534 aaKnown RBP18.16■□□□□ 0.5
PHRF1-202ENST00000413872 RUSC1Q9BVN2 902 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 TCRBV5S4A2TA0A5A2 114 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 MGEA5O60502 916 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 ITGB3P05106 788 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 ARP10275 920 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 GTF2H3Q13889 308 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 FBXL16Q8N461 479 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 SEPT8Q92599 483 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 CENPKQ9BS16 269 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 WNT10BO00744 389 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 ITIH2P19823 946 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 CUL2Q13617 745 aa18.16■□□□□ 0.5
PHRF1-202ENST00000413872 TDRD10Q5VZ19 366 aaKnown RBP18.16■□□□□ 0.5
PHRF1-202ENST00000413872 CCNYL1Q8N7R7 359 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms