RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 DDX23Q9BUQ8 820 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 KIAA1586Q9HCI6 787 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 CYP39A1Q9NYL5 469 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 SHOC2Q9UQ13 582 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 PCDHB2Q9Y5E7 798 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 UBIAD1Q9Y5Z9 338 aa6.1□□□□□ -1.43
CCDC88A-203ENST00000412148 ANK1P16157 1881 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 MYPNQ86TC9 1320 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 DDTLA6NHG4 134 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 H0YCG3 227 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 K7ENM7 598 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 GPR37O15354 613 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 TBC1D12O60347 775 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 DNAJC6O75061 913 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 TGDSO95455 350 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 GCAP28676 217 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 SFNP31947 248 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 WDR4P57081 412 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 MRPS35P82673 323 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 NFIAQ12857 509 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 TNIP1Q15025 636 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 SETDB1Q15047 1291 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 UBAP2Q5T6F2 1119 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 PLEKHA7Q6IQ23 1121 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 PNMA8AQ86V59 439 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 RHOT1Q8IXI2 618 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 PITPNM3Q9BZ71 974 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 BCAS3Q9H6U6 928 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 ARHGEF10LQ9HCE6 1279 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 MRPL47Q9HD33 250 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 TBC1D22BQ9NU19 505 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 POLIQ9UNA4 740 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 SCINQ9Y6U3 715 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 RLFQ13129 1914 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 SFI1A8K8P3 1242 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 DNALI1O14645 258 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 ALOX15BO15296 676 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 TM9SF1O15321 606 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 CYP26A1O43174 497 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 TYROBPO43914 113 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 PEX11AO75192 247 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 ATP6V1C1P21283 382 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 MAPK4P31152 587 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 CHKAP35790 457 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 QARSP47897 775 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 SNRNP35Q16560 246 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 PTPROQ16827 1216 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 EFHC2Q5JST6 749 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 DACT2Q5SW24 774 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 PCNX4Q63HM2 1172 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 XRRA1Q6P2D8 792 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 FAM196AQ6ZSG2 479 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 HAUS6Q7Z4H7 955 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 PCGF5Q86SE9 256 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 SLC47A2Q86VL8 602 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 RCOR2Q8IZ40 523 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 C10orf82Q8WW14 230 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 APBB2Q92870 758 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 NKD2Q969F2 451 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 UTP4Q969X6 686 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 RMDN2Q96LZ7 410 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 RAB20Q9NX57 234 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 ASIC3Q9UHC3 531 aa6.09□□□□□ -1.43
CCDC88A-203ENST00000412148 ZSWIM8A7E2V4 1837 aa6.09□□□□□ -1.44
CCDC88A-203ENST00000412148 CLDN3O15551 220 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 NPTXRO95502 500 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ITGAVP06756 1048 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ADRB2P07550 413 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 FOXN2P32314 431 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CETN2P41208 172 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 MAGEA4P43358 317 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 IFNAR2P48551 515 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 JAK3P52333 1124 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 TAP1Q03518 808 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 FAM98CQ17RN3 349 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 BRDTQ58F21 947 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 FKBP1CQ5VVH2 108 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ADAT2Q7Z6V5 191 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 SLC51AQ86UW1 340 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ZFPM1Q8IX07 1006 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CCDC24Q8N4L8 307 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 NIPA2Q8N8Q9 360 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ARMC2Q8NEN0 867 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ASAP3Q8TDY4 903 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 SEMA4DQ92854 862 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 SLC7A6OSQ96CW6 309 aaPredicted RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 NAF1Q96HR8 494 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 LRRC37BQ96QE4 947 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CBWD1Q9BRT8 395 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 VPS11Q9H270 941 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 CHST7Q9NS84 486 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 SEPT11Q9NVA2 429 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 FEM1BQ9UK73 627 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 STYXL1Q9Y6J8 313 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 E7ESA3 106 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 ACSL3O95573 720 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 FESP07332 822 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 TPBGLP0DKB5 382 aa6.08□□□□□ -1.44
CCDC88A-203ENST00000412148 FDX1P10109 184 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms