RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ACAP3Q96P50 834 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 ZFYVE1Q9HBF4 777 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 EFR3BQ9Y2G0 817 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 TPRKBQ9Y3C4 175 aa13.5□□□□□ -0.25
COL6A3-206ENST00000409809 TPD52L2O43399 206 aaKnown RBP13.49□□□□□ -0.25
COL6A3-206ENST00000409809 PTH1RQ03431 593 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 KYAT1Q16773 422 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 CCDC144BQ3MJ40 725 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 EFHC1Q5JVL4 640 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 BNC2Q6ZN30 1099 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-206ENST00000409809 SH3TC2Q8TF17 1288 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 FAM162AQ96A26 154 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 SERHL2Q9H4I8 314 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 SERHLQ9NQF3 203 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 TLR7Q9NYK1 1049 aaKnown RBP13.49□□□□□ -0.25
COL6A3-206ENST00000409809 GEMIN4P57678 1058 aaKnown RBP13.49□□□□□ -0.25
COL6A3-206ENST00000409809 FASTKD1Q53R41 847 aaKnown RBP13.49□□□□□ -0.25
COL6A3-206ENST00000409809 C12orf60Q5U649 245 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 TRMT2AQ8IZ69 625 aaKnown RBP13.49□□□□□ -0.25
COL6A3-206ENST00000409809 STK32AQ8WU08 396 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 ARHGEF16Q5VV41 709 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 IZUMO2Q6UXV1 221 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 STX12Q86Y82 276 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 DDIASQ8IXT1 998 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 LRRC1Q9BTT6 524 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 SLC9A2Q9UBY0 812 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 MROH7Q68CQ1 1323 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 ZBTB22O15209 634 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 IDH3BO43837 385 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 C16orf72Q14CZ0 275 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 DIS3LQ8TF46 1054 aaKnown RBP13.49□□□□□ -0.25
COL6A3-206ENST00000409809 CCDC17Q96LX7 622 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 MYL10Q9BUA6 226 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 COPRSQ9NQ92 184 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 FKBP14Q9NWM8 211 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 CAMSAP1Q5T5Y3 1602 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 SLC4A1P02730 911 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 KCNK10P57789 538 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 SESN2P58004 480 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-206ENST00000409809 CTDSPL2Q05D32 466 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 TNFAIP1Q13829 316 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 C2CD6Q53TS8 623 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 TMPRSS6Q8IU80 811 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 AHI1Q8N157 1196 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 GALNT4Q8N4A0 578 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 ITFG2Q969R8 447 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 CENPTQ96BT3 561 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 C9orf16Q9BUW7 83 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 STAP1Q9ULZ2 295 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 E5RI56 91 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 MATN2O00339 956 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 MAGEA10P43363 369 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-206ENST00000409809 ARSEP51690 589 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 USH1GQ495M9 461 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 AP3S1Q92572 193 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 LRRC4Q9HBW1 653 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 SPATA2Q9UM82 520 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 AXIN1O15169 862 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 STX11O75558 287 aa13.49□□□□□ -0.25
COL6A3-206ENST00000409809 ARIH2O95376 493 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 SPRP35270 261 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 HSPH1Q92598 858 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 CES2O00748 559 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ANXA11P50995 505 aaKnown RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 PRKAA2P54646 552 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 GFPT1Q06210 699 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 CFBP00751 764 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ADD1P35611 737 aaKnown RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 COX10Q12887 443 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 LRRC36Q1X8D7 754 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 MTHFSDQ2M296 383 aaKnown RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 OSCP1Q8WVF1 389 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ARHGEF26Q96DR7 871 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 KMT5AQ9NQR1 393 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 TMEM161AQ9NX61 479 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ATP9AO75110 1047 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 FGFR4P22455 802 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 CHRNB3Q05901 458 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 PMF1Q6P1K2 205 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 OR8H2Q8N162 312 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 RORBQ92753 470 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 MAPRE3Q9UPY8 281 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 WFS1O76024 890 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ZNF544Q6NX49 715 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 TRAPPC11Q7Z392 1133 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 MINDY2Q8NBR6 621 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ING3Q9NXR8 418 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 TBX22Q9Y458 520 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 CPSF1Q10570 1443 aaKnown RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 SH2B2O14492 632 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ZNF197O14709 1029 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 RAD51BO15315 384 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ENO3P13929 434 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 NLRP10Q86W26 655 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 HINFPQ9BQA5 517 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ILKAPQ9H0C8 392 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 ACAD9Q9H845 621 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 RRN3Q9NYV6 651 aa13.48□□□□□ -0.25
COL6A3-206ENST00000409809 CRNNQ9UBG3 495 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-206ENST00000409809 LSM1O15116 133 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms