RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RAB20Q9NX57 234 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 NEU2Q9Y3R4 380 aa22.28■■□□□ 1.16
CTCF-202ENST00000401394 DHX15O43143 795 aaKnown RBP22.27■■□□□ 1.16
CTCF-202ENST00000401394 RPL7AP62424 266 aaKnown RBP22.27■■□□□ 1.16
CTCF-202ENST00000401394 SEZ6Q53EL9 994 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 B3GNT9Q6UX72 402 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 LDHDQ86WU2 507 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 SLC7A6OSQ96CW6 309 aaPredicted RBP22.27■■□□□ 1.16
CTCF-202ENST00000401394 TBC1D10AQ9BXI6 508 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 VPS37BQ9H9H4 285 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 NPHS2Q9NP85 383 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 PEX11AO75192 247 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 SMNDC1O75940 238 aaKnown RBP eCLIP22.27■■□□□ 1.16
CTCF-202ENST00000401394 YWHABP31946 246 aaKnown RBP22.27■■□□□ 1.16
CTCF-202ENST00000401394 KRT39Q6A163 491 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 CAPRIN2Q6IMN6 1127 aaKnown RBP22.27■■□□□ 1.16
CTCF-202ENST00000401394 ATL2Q8NHH9 583 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 ZNF516Q92618 1163 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 FAM213AQ9BRX8 229 aa22.27■■□□□ 1.16
CTCF-202ENST00000401394 FAM47DPA6NHR8 397 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 CDH16O75309 829 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 ASMTLO95671 621 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 IFNB1P01574 187 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 EIF2AK2P19525 551 aaKnown RBP22.26■■□□□ 1.15
CTCF-202ENST00000401394 NBPF20Q3BBV1 942 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 ARHGEF18Q6ZSZ5 1173 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 GREB1LQ9C091 1923 aaPredicted RBP22.26■■□□□ 1.15
CTCF-202ENST00000401394 GAS8O95995 478 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 LINGO3P0C6S8 592 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 CCNB1P14635 433 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 PECAM1P16284 738 aaPredicted RBP22.26■■□□□ 1.15
CTCF-202ENST00000401394 TAF1BQ53T94 588 aaPredicted RBP22.26■■□□□ 1.15
CTCF-202ENST00000401394 THEMIS2Q5TEJ8 643 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 NT5C1BQ96P26 610 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 MAK16Q9BXY0 300 aaKnown RBP22.26■■□□□ 1.15
CTCF-202ENST00000401394 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.26■■□□□ 1.154e-19■■■□□ 16.9
CTCF-202ENST00000401394 ADGRA3Q8IWK6 1321 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 DENND3A2RUS2 1198 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 GBP1P32455 592 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 SLC8A3P57103 927 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 LRRC37BQ96QE4 947 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 TRABDQ9H4I3 376 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 UBN1Q9NPG3 1134 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 EURLQ9NYK6 297 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 UVRAGQ9P2Y5 699 aa22.26■■□□□ 1.15
CTCF-202ENST00000401394 MYPNQ86TC9 1320 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 SPDYE5A6NIY4 337 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 CA4P22748 312 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 KLF1Q13351 362 aaPredicted RBP22.25■■□□□ 1.15
CTCF-202ENST00000401394 XKR9Q5GH70 373 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 ZBED8Q8IZ13 594 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 NAF1Q96HR8 494 aaKnown RBP22.25■■□□□ 1.15
CTCF-202ENST00000401394 IFT74Q96LB3 600 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 MXRA8Q9BRK3 442 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 OSBPL8Q9BZF1 889 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 MYCLP12524 364 aaPredicted RBP22.25■■□□□ 1.15
CTCF-202ENST00000401394 UNGP13051 313 aaPredicted RBP22.25■■□□□ 1.15
CTCF-202ENST00000401394 STRN3Q13033 797 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 TRABD2AQ86V40 505 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 FBXL13Q8NEE6 735 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 NUDCD1Q96RS6 583 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 DENND2DQ9H6A0 471 aaPredicted RBP22.25■■□□□ 1.15
CTCF-202ENST00000401394 TMEM206Q9H813 350 aa22.25■■□□□ 1.15
CTCF-202ENST00000401394 UMODL1Q5DID0 1318 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 DPPA5A6NC42 116 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 MRPS9P82933 396 aaKnown RBP22.24■■□□□ 1.15
CTCF-202ENST00000401394 MAPK6Q16659 721 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 MTDHQ86UE4 582 aaKnown RBP22.24■■□□□ 1.15
CTCF-202ENST00000401394 ZBTB10Q96DT7 871 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 OSBPL1AQ9BXW6 950 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 PIDD1Q9HB75 910 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 PTPRJQ12913 1337 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 THSD7AQ9UPZ6 1657 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 NPTX2P47972 431 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 POLGP54098 1239 aaPredicted RBP22.24■■□□□ 1.15
CTCF-202ENST00000401394 DYNLT1P63172 113 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 RFWD2Q8NHY2 731 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 TMEM121Q9BTD3 319 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 ZNF148Q9UQR1 794 aa22.24■■□□□ 1.15
CTCF-202ENST00000401394 ADRA1DP25100 572 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 SSTR1P30872 391 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 ACOT2P49753 483 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 IL9RQ01113 521 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 GPS1Q13098 491 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 TCEAL1Q15170 157 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 CLUL1Q15846 466 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 DACT2Q5SW24 774 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 RNF43Q68DV7 783 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 OTOAQ7RTW8 1153 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 PLCD4Q9BRC7 762 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 TBX20Q9UMR3 447 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 ASTN2O75129 1339 aaPredicted RBP22.23■■□□□ 1.15
CTCF-202ENST00000401394 RFX1P22670 979 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 MOGSQ13724 837 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 ANO7Q6IWH7 933 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 CCHCR1Q8TD31 782 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 MIPEPQ99797 713 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 PIK3CAP42336 1068 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 GTF2BQ00403 316 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 ZBTB41Q5SVQ8 909 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms