RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 FAM47EQ6ZV65 393 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 MON1BQ7L1V2 547 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 DHX37Q8IY37 1157 aaKnown RBP13.5□□□□□ -0.25
SHMT1-205ENST00000395684 CCDC89Q8N998 374 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 RBM15Q96T37 977 aaKnown RBP eCLIP13.5□□□□□ -0.25
SHMT1-205ENST00000395684 PLCD4Q9BRC7 762 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 FAM213AQ9BRX8 229 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 NTPCRQ9BSD7 190 aaKnown RBP13.5□□□□□ -0.25
SHMT1-205ENST00000395684 OSBPL8Q9BZF1 889 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 TMEM39BQ9GZU3 492 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 ANKEF1Q9NU02 776 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 KLHL14Q9P2G3 628 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 C15orf41Q9Y2V0 281 aa13.5□□□□□ -0.25
SHMT1-205ENST00000395684 MYBL1P10243 752 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 MYCLP12524 364 aaPredicted RBP13.49□□□□□ -0.25
SHMT1-205ENST00000395684 CD58P19256 250 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 GCAP28676 217 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 MSH2P43246 934 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 CLNS1AP54105 237 aaKnown RBP13.49□□□□□ -0.25
SHMT1-205ENST00000395684 STAT4Q14765 748 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 RNF43Q68DV7 783 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 C15orf39Q6ZRI6 1047 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 ENOSF1Q7L5Y1 443 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 GPD1LQ8N335 351 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 GLIS1Q8NBF1 620 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 PITPNM3Q9BZ71 974 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 ACTL7BQ9Y614 415 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 CHRNA5P30532 468 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 MAGEA4P43358 317 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 WNT7BP56706 349 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 STRN3Q13033 797 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 PGM5Q15124 567 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 TMED2Q15363 201 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 P3H1Q32P28 736 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 SPOPLQ6IQ16 392 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 PASD1Q8IV76 773 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 RHOT1Q8IXI2 618 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 OGFOD1Q8N543 542 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 C11orf70Q9BRQ4 267 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 C1orf112Q9NSG2 853 aa13.49□□□□□ -0.25
SHMT1-205ENST00000395684 GSTTP1A0A1W2PQM5 241 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 WDR64B1ANS9 1081 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 HNRNPDLO14979 420 aaKnown RBP13.48□□□□□ -0.25
SHMT1-205ENST00000395684 SPAG7O75391 227 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ECM2O94769 699 aaPredicted RBP13.48□□□□□ -0.25
SHMT1-205ENST00000395684 CCNB1P14635 433 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 GJC1P36383 396 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 RPS6P62753 249 aaKnown RBP13.48□□□□□ -0.25
SHMT1-205ENST00000395684 MAMLD1Q13495 774 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ATP13A4Q4VNC1 1196 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 MIS18BP1Q6P0N0 1132 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 PPP1R21Q6ZMI0 780 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 MCF2L2Q86YR7 1114 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 SPOCK2Q92563 424 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 IFT74Q96LB3 600 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 PAIP2Q9BPZ3 127 aaKnown RBP13.48□□□□□ -0.25
SHMT1-205ENST00000395684 CCDC77Q9BR77 488 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 RAVER2Q9HCJ3 691 aaKnown RBP13.48□□□□□ -0.25
SHMT1-205ENST00000395684 USTQ9Y2C2 406 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 FAM47DPA6NHR8 397 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 H0YIN7 160 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 PSTPIP1O43586 416 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ZC3H11AO75152 810 aaKnown RBP eCLIP13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ASMTLO95671 621 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 CCND1P24385 295 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 GHRHRQ02643 423 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 DGKZQ13574 1117 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ACVR2BQ13705 512 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 GSTA5Q7RTV2 222 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 TAS1R3Q7RTX0 852 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 USP37Q86T82 979 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ERICH1Q86X53 443 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ZNF677Q86XU0 584 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 KATNAL2Q8IYT4 538 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ANKRD35Q8N283 1001 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ZCCHC9Q8N567 271 aaKnown RBP13.48□□□□□ -0.25
SHMT1-205ENST00000395684 BBOF1Q8ND07 529 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 SPIRE2Q8WWL2 714 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 TRIM11Q96F44 468 aa13.48□□□□□ -0.25
SHMT1-205ENST00000395684 FHDC1Q9C0D6 1143 aaPredicted RBP13.48□□□□□ -0.25
SHMT1-205ENST00000395684 ZNF862O60290 1169 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 UNC5CO95185 931 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 ZSCAN5DPP0CG00 497 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 ACO1P21399 889 aaKnown RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 JAK3P52333 1124 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 IL9RQ01113 521 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 CRYMQ14894 314 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 HP1BP3Q5SSJ5 553 aaPredicted RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 TRABD2AQ86V40 505 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 UTP4Q969X6 686 aaKnown RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 RSRC1Q96IZ7 334 aaKnown RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 CEP170P1Q96L14 293 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 KIF9Q9HAQ2 790 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 KLHL11Q9NVR0 708 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 NOP53Q9NZM5 478 aaKnown RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 ADAM22Q9P0K1 906 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 A0A1B0GUA9 196 aa13.47□□□□□ -0.25
SHMT1-205ENST00000395684 TESPA1A2RU30 521 aaPredicted RBP13.47□□□□□ -0.25
SHMT1-205ENST00000395684 DIAPH2O60879 1101 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms