RNA–Protein interactions for RNA: ENST00000395354.1

LMNB1-202, Transcript of lamin B1, humanhuman

TSL 1 (best) BASIC

Gene LMNB1, Length 1,572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-202ENST00000395354 TNNI1P19237 187 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 AXLP30530 894 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 GCNT1Q02742 428 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 PLEKHG4Q58EX7 1191 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 ATF7IP2Q5U623 682 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 PAPD7Q5XG87 772 aaKnown RBP20.73■□□□□ 0.91
LMNB1-202ENST00000395354 SMYD5Q6GMV2 418 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 FAM71AQ8IYT1 594 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 MNS1Q8NEH6 495 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 DBF4BQ8NFT6 615 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 SHC3Q92529 594 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 SEPT8Q92599 483 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 BADQ92934 168 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 NOX5Q96PH1 765 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 PDE11AQ9HCR9 933 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 CHST12Q9NRB3 414 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 PIN4Q9Y237 131 aaKnown RBP20.73■□□□□ 0.91
LMNB1-202ENST00000395354 TET1Q8NFU7 2136 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 TANC1Q9C0D5 1861 aa20.73■□□□□ 0.91
LMNB1-202ENST00000395354 DDX3XO00571 662 aaKnown RBP eCLIP20.72■□□□□ 0.918e-31■■■□□ 15.3
LMNB1-202ENST00000395354 PNMA6AP0CW24 399 aaPredicted RBP20.72■□□□□ 0.91
LMNB1-202ENST00000395354 AMPD2Q01433 879 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 POU5F1Q01860 360 aaKnown RBP20.72■□□□□ 0.91
LMNB1-202ENST00000395354 CDR2LQ86X02 465 aaPredicted RBP20.72■□□□□ 0.91
LMNB1-202ENST00000395354 RPUSD2Q8IZ73 545 aaKnown RBP20.72■□□□□ 0.91
LMNB1-202ENST00000395354 PPM1KQ8N3J5 372 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 JRKLQ9Y4A0 524 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 CEP290O15078 2479 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 ZSCAN20P17040 1043 aaPredicted RBP20.72■□□□□ 0.91
LMNB1-202ENST00000395354 WHAMMP3Q1A5X7 153 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 WDR44Q5JSH3 913 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 NOTUMQ6P988 496 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 WDR49Q8IV35 697 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 CEP112Q8N8E3 955 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 KREMEN1Q96MU8 473 aa20.72■□□□□ 0.91
LMNB1-202ENST00000395354 CPSF3Q9UKF6 684 aaKnown RBP20.72■□□□□ 0.91
LMNB1-202ENST00000395354 EFCAB8A8MWE9 144 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 LRRN2O75325 713 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 CAPN15O75808 1086 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 TNFAIP3P21580 790 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 TUBB4BP68371 445 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 ZBTB41Q5SVQ8 909 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 TDRD10Q5VZ19 366 aaKnown RBP20.71■□□□□ 0.91
LMNB1-202ENST00000395354 EEF1DP3Q658K8 133 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 OLIG1Q8TAK6 271 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 VWCEQ96DN2 955 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 CARD6Q9BX69 1037 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 PDZD7Q9H5P4 517 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 C1orf112Q9NSG2 853 aa20.71■□□□□ 0.91
LMNB1-202ENST00000395354 A0A0A6YYK5 440 aaPredicted RBP20.7■□□□□ 0.9
LMNB1-202ENST00000395354 MOCS3O95396 460 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 HLA-DRAP01903 254 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 H2AFZP0C0S5 128 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 WNT7BP56706 349 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 FPGSQ05932 587 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 IFI16Q16666 785 aaKnown RBP20.7■□□□□ 0.9
LMNB1-202ENST00000395354 KYAT1Q16773 422 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 H2AFVQ71UI9 128 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 TRAPPC11Q7Z392 1133 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 ZBTB33Q86T24 672 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 LNX1Q8TBB1 728 aaPredicted RBP20.7■□□□□ 0.9
LMNB1-202ENST00000395354 APBB2Q92870 758 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 AGPAT1Q99943 283 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 FTHL17Q9BXU8 183 aa20.7■□□□□ 0.9
LMNB1-202ENST00000395354 MCF2P10911 925 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 PRLRP16471 622 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 PIK3CAP42336 1068 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 RGS19P49795 217 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 PPIGQ13427 754 aaKnown RBP eCLIP20.69■□□□□ 0.92e-6■□□□□ 10.3
LMNB1-202ENST00000395354 DSC3Q14574 896 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 ZNF568Q3ZCX4 644 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 TWF2Q6IBS0 349 aaKnown RBP20.69■□□□□ 0.9
LMNB1-202ENST00000395354 SLC27A1Q6PCB7 646 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 FAM43BQ6ZT52 329 aaPredicted RBP20.69■□□□□ 0.9
LMNB1-202ENST00000395354 ADAM2Q99965 735 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 LBHD1Q9BQE6 289 aaPredicted RBP20.69■□□□□ 0.9
LMNB1-202ENST00000395354 IL23AQ9NPF7 189 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 SAR1BQ9Y6B6 198 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 CAPN6Q9Y6Q1 641 aa20.69■□□□□ 0.9
LMNB1-202ENST00000395354 MGEA5O60502 916 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 TADA3O75528 432 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 PFKMP08237 780 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 ACRP10323 421 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 HARSP12081 509 aaKnown RBP20.68■□□□□ 0.9
LMNB1-202ENST00000395354 BIRC3Q13489 604 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 TCTN1Q2MV58 587 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 CNKSR3Q6P9H4 555 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 RTN4RL1Q86UN2 441 aaPredicted RBP20.68■□□□□ 0.9
LMNB1-202ENST00000395354 GLYCTKQ8IVS8 523 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 KAT5Q92993 513 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 ADPGKQ9BRR6 497 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 SALL4Q9UJQ4 1053 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 PTPRJQ12913 1337 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 TULP1O00294 542 aaPredicted RBP20.68■□□□□ 0.9
LMNB1-202ENST00000395354 IL18RAPO95256 599 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 VNN1O95497 513 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 ATP1A1P05023 1023 aaKnown RBP20.68■□□□□ 0.9
LMNB1-202ENST00000395354 TNFSF9P41273 254 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 IKBKEQ14164 716 aa20.68■□□□□ 0.9
LMNB1-202ENST00000395354 UBXN11Q5T124 520 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms