RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 FMO5P49326 533 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 SCNN1GP51170 649 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 DLG4P78352 724 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 GCNT1Q02742 428 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 NR1I3Q14994 352 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 CTC1Q2NKJ3 1217 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 HABP4Q5JVS0 413 aaKnown RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 FAM171BQ6P995 826 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 LILRA6Q6PI73 481 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 CHRDL2Q6WN34 429 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 TRAPPC11Q7Z392 1133 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 NELFCDQ8IXH7 590 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 SYCP3Q8IZU3 236 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 SCML4Q8N228 414 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 CMASQ8NFW8 434 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 OR5B17Q8NGF7 314 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 OLIG1Q8TAK6 271 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 C2orf15Q8WU43 125 aaKnown RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 ERCC4Q92889 916 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 ZNF668Q96K58 619 aaPredicted RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 ZNF558Q96NG5 402 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 PPP1R16BQ96T49 567 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 ANP32EQ9BTT0 268 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 COLEC11Q9BWP8 271 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 RTN4Q9NQC3 1192 aaKnown RBP7.58□□□□□ -1.2
LIMA1-202ENST00000394943 DPP3Q9NY33 737 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 TUBGCP4Q9UGJ1 667 aa7.58□□□□□ -1.2
LIMA1-202ENST00000394943 NCANO14594 1321 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ARHGEF37A1IGU5 675 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 PODXLO00592 558 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ABLIM3O94929 683 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 AKAP5P24588 427 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 WEE1P30291 646 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ASPAP45381 313 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 JAM2P57087 298 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 RBP5P82980 135 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 KRT39Q6A163 491 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 SV2AQ7L0J3 742 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 CSGALNACT2Q8N6G5 542 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 KBTBD7Q8WVZ9 684 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 SCLT1Q96NL6 688 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 UBXN6Q9BZV1 441 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 CBX8Q9HC52 389 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.57□□□□□ -1.2
LIMA1-202ENST00000394943 SPG21Q9NZD8 308 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ADAM28Q9UKQ2 775 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 LRFN2Q9ULH4 789 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 HES2Q9Y543 173 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 A0A1W2PQJ5 194 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 SOBPA7XYQ1 873 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ITGB1P05556 798 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ACO1P21399 889 aaKnown RBP7.57□□□□□ -1.2
LIMA1-202ENST00000394943 DNAJB2P25686 324 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 HOXA9P31269 272 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ACOT2P49753 483 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 GATMP50440 423 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 FXR1P51114 621 aaKnown RBP eCLIP7.57□□□□□ -1.2
LIMA1-202ENST00000394943 LILRA4P59901 499 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 VWA3BQ502W6 1294 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 UNC93AQ86WB7 457 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 TIFAQ96CG3 184 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 SAAL1Q96ER3 474 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 BICD1Q96G01 975 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 CNOT6LQ96LI5 555 aaKnown RBP7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ZFP42Q96MM3 310 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ZNF560Q96MR9 790 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 C11orf84Q9BUA3 381 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-202ENST00000394943 GPR88Q9GZN0 384 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 GANQ9H2C0 597 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 IL37Q9NZH6 218 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 MSRAQ9UJ68 235 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 TBKBP1A7MCY6 615 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 LGALS16A8MUM7 142 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 CLIC2O15247 247 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 SPTLC1O15269 473 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 TLL1O43897 1013 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 KCNMA1Q12791 1236 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 SGSM1Q2NKQ1 1148 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 SV2CQ496J9 727 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ANO6Q4KMQ2 910 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 CBWD6Q4V339 395 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 CBWD3Q5JTY5 395 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 CBWD5Q5RIA9 395 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ENOSF1Q7L5Y1 443 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ZBTB33Q86T24 672 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 CRYBG2Q8N1P7 616 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 KIAA1958Q8N8K9 716 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 EHBP1Q8NDI1 1231 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 MRPL38Q96DV4 380 aaKnown RBP7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ANKRD36BP1Q96IX9 119 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 SYT11Q9BT88 431 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ZCWPW1Q9H0M4 648 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 PDE11AQ9HCR9 933 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 COMMD8Q9NX08 183 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ANKFY1Q9P2R3 1169 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 DNAJB4Q9UDY4 337 aa7.57□□□□□ -1.2
LIMA1-202ENST00000394943 ARMCX3Q9UH62 379 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-202ENST00000394943 EPOPA6NHQ4 379 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 EXOC3O60645 756 aa7.56□□□□□ -1.2
LIMA1-202ENST00000394943 MICAL2O94851 1124 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms