RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 PCYOX1Q9UHG3 505 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 TMX2Q9Y320 296 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 CIB2O75838 187 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 KRT81Q14533 505 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 CRY2Q49AN0 593 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 SNRNP48Q6IEG0 339 aaKnown RBP17.08■□□□□ 0.32
PCDH1-203ENST00000394536 ATP6V0A4Q9HBG4 840 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 NINJ2Q9NZG7 142 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 WHRNQ9P202 907 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 ZNF70Q9UC06 446 aaPredicted RBP17.08■□□□□ 0.32
PCDH1-203ENST00000394536 PHTF1Q9UMS5 762 aa17.08■□□□□ 0.32
PCDH1-203ENST00000394536 ENO4A6NNW6 628 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 F5H423 210 aaPredicted RBP17.07■□□□□ 0.32
PCDH1-203ENST00000394536 WEE2P0C1S8 567 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 SLC1A1P43005 524 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 IGBP1P78318 339 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 HIF1AQ16665 826 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 SLC27A3Q5K4L6 730 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 LVRNQ6Q4G3 990 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 SH3BP5LQ7L8J4 393 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 LONP2Q86WA8 852 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 CDR2LQ86X02 465 aaPredicted RBP17.07■□□□□ 0.32
PCDH1-203ENST00000394536 AFF2P51816 1311 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 SMIM24O75264 130 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 KRT4P19013 534 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 HMGB2P26583 209 aaKnown RBP17.07■□□□□ 0.32
PCDH1-203ENST00000394536 CCND2P30279 289 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 NFX1Q12986 1120 aaKnown RBP17.07■□□□□ 0.32
PCDH1-203ENST00000394536 CYP4A22Q5TCH4 519 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 CYTH2Q99418 400 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 TMEM121Q9BTD3 319 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 SLC13A1Q9BZW2 595 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 GGA2Q9UJY4 613 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 HEY1Q9Y5J3 304 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 H0YCG3 227 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 GHRP10912 638 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 DRG2P55039 364 aaKnown RBP17.07■□□□□ 0.32
PCDH1-203ENST00000394536 ARL4CP56559 192 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 PREPLQ4J6C6 727 aaPredicted RBP17.07■□□□□ 0.32
PCDH1-203ENST00000394536 ZDHHC24Q6UX98 284 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 C3orf62Q6ZUJ4 267 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 APBB1IPQ7Z5R6 666 aaPredicted RBP17.07■□□□□ 0.32
PCDH1-203ENST00000394536 PPM1NQ8N819 430 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 C1orf131Q8NDD1 294 aaKnown RBP17.07■□□□□ 0.32
PCDH1-203ENST00000394536 TRIM55Q9BYV6 548 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 SLCO1B3Q9NPD5 702 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 PARVAQ9NVD7 372 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 USH1CQ9Y6N9 552 aa17.07■□□□□ 0.32
PCDH1-203ENST00000394536 CCDC160A6NGH7 325 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 MCF2LO15068 1137 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 CYP3A4P08684 503 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 ETS1P14921 441 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 MDH1BQ5I0G3 518 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 CAPRIN2Q6IMN6 1127 aaKnown RBP17.06■□□□□ 0.32
PCDH1-203ENST00000394536 PAGR1Q9BTK6 254 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 GRHL1Q9NZI5 618 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 SLC9A2Q9UBY0 812 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 RPTORQ8N122 1335 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 TXNDC9O14530 226 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 MAP3K6O95382 1288 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 VIL1P09327 827 aaKnown RBP17.06■□□□□ 0.32
PCDH1-203ENST00000394536 MYBL1P10243 752 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 TTLL12Q14166 644 aaPredicted RBP17.06■□□□□ 0.32
PCDH1-203ENST00000394536 MCOLN2Q8IZK6 566 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 DCLK3Q9C098 648 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 ZDHHC18Q9NUE0 388 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 IP6K2Q9UHH9 426 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 R3HDM2Q9Y2K5 976 aaKnown RBP17.06■□□□□ 0.32
PCDH1-203ENST00000394536 CCDC195A0A1B0GUA6 201 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 A8MUI8 341 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 RASSF9O75901 435 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 NR3C2P08235 984 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 DACT2Q5SW24 774 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 PRAMEF18Q5VWM3 479 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 ENOSF1Q7L5Y1 443 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 FAM71AQ8IYT1 594 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 TLCD1Q96CP7 247 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 NLRP4Q96MN2 994 aa17.06■□□□□ 0.32
PCDH1-203ENST00000394536 CCND1P24385 295 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 SFNP31947 248 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 LGSNQ5TDP6 509 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 PCNX4Q63HM2 1172 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 CHADLQ6NUI6 762 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 CERKQ8TCT0 537 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 CENPTQ96BT3 561 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 SENP7Q9BQF6 1050 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 KIF9Q9HAQ2 790 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 SAE1Q9UBE0 346 aaPredicted RBP17.05■□□□□ 0.32
PCDH1-203ENST00000394536 PPARGC1AQ9UBK2 798 aaKnown RBP17.05■□□□□ 0.32
PCDH1-203ENST00000394536 USP54Q70EL1 1684 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 PKD1L3Q7Z443 1732 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 IGLV3-22A0A075B6J6 115 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 TNNC2P02585 160 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 PAX7P23759 505 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 MKRN3Q13064 507 aaKnown RBP17.05■□□□□ 0.32
PCDH1-203ENST00000394536 MTMR2Q13614 643 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 NCOA4Q13772 614 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 CLEC16AQ2KHT3 1053 aa17.05■□□□□ 0.32
PCDH1-203ENST00000394536 UBAP2Q5T6F2 1119 aaKnown RBP17.05■□□□□ 0.32
PCDH1-203ENST00000394536 MIS18BP1Q6P0N0 1132 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms