RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CDC23Q9UJX2 597 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 DERAQ9Y315 318 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 SIP14410 1827 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 SCN5AQ14524 2016 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 MAPK13O15264 365 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 SLC16A3O15427 465 aaKnown RBP10.99□□□□□ -0.65
VPS53-202ENST00000389040 KRT86O43790 486 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 EXTL3O43909 919 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 FAM189A1O60320 539 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 IL18RAPO95256 599 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 NR3C1P04150 777 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 PLEKP08567 350 aaPredicted RBP10.99□□□□□ -0.65
VPS53-202ENST00000389040 KCNE1P15382 129 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 PAX3P23760 479 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 SPA17Q15506 151 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 HABP4Q5JVS0 413 aaKnown RBP10.99□□□□□ -0.65
VPS53-202ENST00000389040 CLLU1OSQ5K130 101 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 TET1Q8NFU7 2136 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 TIFAQ96CG3 184 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 ARID3AQ99856 593 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 LSM14BQ9BX40 385 aaKnown RBP10.99□□□□□ -0.65
VPS53-202ENST00000389040 NUCKS1Q9H1E3 243 aaKnown RBP10.99□□□□□ -0.65
VPS53-202ENST00000389040 RNF19AQ9NV58 838 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 SNTG2Q9NY99 539 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 PARP2Q9UGN5 583 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 ARMCX3Q9UH62 379 aaPredicted RBP10.99□□□□□ -0.65
VPS53-202ENST00000389040 CPSF3Q9UKF6 684 aaKnown RBP10.99□□□□□ -0.65
VPS53-202ENST00000389040 TFR2Q9UP52 801 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 TTC3P53804 2025 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 TBKBP1A7MCY6 615 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 ANKRD63C9JTQ0 380 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 XPOTO43592 962 aaKnown RBP10.98□□□□□ -0.65
VPS53-202ENST00000389040 RECQL4O94761 1208 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 NOL4O94818 638 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 LCA5LO95447 670 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 H2AFXP16104 143 aaPredicted RBP10.98□□□□□ -0.65
VPS53-202ENST00000389040 LAG3P18627 525 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 DNAJB2P25686 324 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 KIF11P52732 1056 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 VAV2P52735 878 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 CYP27A1Q02318 531 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 KCNH2Q12809 1159 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 GRIK3Q13003 919 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 RSRC2Q7L4I2 434 aaKnown RBP10.98□□□□□ -0.65
VPS53-202ENST00000389040 ZBTB33Q86T24 672 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 USP37Q86T82 979 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 GPD1LQ8N335 351 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 RNF169Q8NCN4 708 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 SYN2Q92777 582 aaPredicted RBP10.98□□□□□ -0.65
VPS53-202ENST00000389040 ZBTB45Q96K62 511 aaPredicted RBP10.98□□□□□ -0.65
VPS53-202ENST00000389040 RPS6KC1Q96S38 1066 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 TMEM175Q9BSA9 504 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 TSGA10Q9BZW7 698 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 DEF6Q9H4E7 631 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 RPF1Q9H9Y2 349 aaKnown RBP10.98□□□□□ -0.65
VPS53-202ENST00000389040 CNTN3Q9P232 1028 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 PCDH10Q9P2E7 1040 aa10.98□□□□□ -0.65
VPS53-202ENST00000389040 RCCD1A6NED2 376 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 ZNF233A6NK53 670 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 C5orf67F2Z3F1 127 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 ZNF263O14978 683 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 AKAP3O75969 853 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 THP07101 528 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 EPB41P11171 864 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 FGFR1P11362 822 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 CYP3A5P20815 502 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 PPM1AP35813 382 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 EIF4A3P38919 411 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 ALDH7A1P49419 539 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 KIF5AQ12840 1032 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 CDR2LQ86X02 465 aaPredicted RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 THNSL1Q8IYQ7 743 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 CEP112Q8N8E3 955 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 XXYLT1Q8NBI6 393 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 HELQQ8TDG4 1101 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 GOLGA1Q92805 767 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 UROC1Q96N76 676 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 FAM193BQ96PV7 902 aaPredicted RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 TGS1Q96RS0 853 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 CRACR2AQ9BSW2 395 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 LACRTQ9GZZ8 138 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 METTL14Q9HCE5 456 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 DMAC2Q9NW81 257 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 C2CD2Q9Y426 696 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 HES2Q9Y543 173 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 PCDHB12Q9Y5F1 795 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 AKR1B10O60218 316 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 AFPP02771 609 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 ALDH2P05091 517 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 AKAP5P24588 427 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 RPL9P32969 192 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 BMPR1AP36894 532 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 MLH1P40692 756 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 POLR2FP61218 127 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 ERVK-21P61565 698 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 RNASELQ05823 741 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 WHAMMP3Q1A5X7 153 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 SLC10A6Q3KNW5 377 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 SFMBT2Q5VUG0 894 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 GSTCDQ8NEC7 633 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms