RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 TRIM51Q9BSJ1 452 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 HEMGNQ9BXL5 484 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 CNOT8Q9UFF9 292 aaKnown RBP11.53□□□□□ -0.56
NEDD9-201ENST00000379433 KIF13BQ9NQT8 1826 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 EXTL3O43909 919 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 CXCL8P10145 99 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 COMTP21964 271 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 CDH8P55286 799 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 MYL6P60660 151 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 KIZQ2M2Z5 673 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 SPIRE2Q8WWL2 714 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 ALG3Q92685 438 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 FGD4Q96M96 766 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 SENP7Q9BQF6 1050 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 IMPG2Q9BZV3 1241 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 ANAPC7Q9UJX3 599 aa11.53□□□□□ -0.56
NEDD9-201ENST00000379433 SMIM23A6NLE4 172 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 TTI1O43156 1089 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 DYNC1LI2O43237 492 aaPredicted RBP11.52□□□□□ -0.56
NEDD9-201ENST00000379433 TMEM191BP0C7N4 346 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 CHRNB2P17787 502 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 GGCXP38435 758 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 NAMPTP43490 491 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 KCNJ1P48048 391 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 GSCP56915 257 aaPredicted RBP11.52□□□□□ -0.56
NEDD9-201ENST00000379433 NOP14P78316 857 aaKnown RBP11.52□□□□□ -0.56
NEDD9-201ENST00000379433 GPS2Q13227 327 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 NCOA4Q13772 614 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 TRIP13Q15645 432 aaPredicted RBP11.52□□□□□ -0.56
NEDD9-201ENST00000379433 CCDC50Q8IVM0 306 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 ZBTB8OSQ8IWT0 167 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 TRIM42Q8IWZ5 723 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 SAMD3Q8N6K7 520 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 LMBR1Q8WVP7 490 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 BRI3BPQ8WY22 251 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 RUFY1Q96T51 708 aa11.52□□□□□ -0.56
NEDD9-201ENST00000379433 SART1O43290 800 aaKnown RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 SLC25A27O95847 323 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 CYP2B6P20813 491 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 VASPP50552 380 aaPredicted RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 HUNKP57058 714 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 FMO1Q01740 532 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 CRELD2Q6UXH1 353 aaPredicted RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 CCNI2Q6ZMN8 369 aaPredicted RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 UBE2Q1Q7Z7E8 422 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 NT5DC3Q86UY8 548 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 TAB3Q8N5C8 712 aaPredicted RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 ZNF564Q8TBZ8 553 aaPredicted RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 NTPCRQ9BSD7 190 aaKnown RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 APOBEC3GQ9HC16 384 aaKnown RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 PDLIM7Q9NR12 457 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 HES2Q9Y543 173 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 PDE4DIPQ5VU43 2346 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 DOCK3Q8IZD9 2030 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 ADCY3O60266 1144 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 STAM2O75886 525 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 IQCF3P0C7M6 154 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 CYP2C19P33261 490 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 HNRNPH2P55795 449 aaKnown RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 GPC5P78333 572 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 KCNV1Q6PIU1 500 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 LRRC57Q8N9N7 239 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 USP38Q8NB14 1042 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 RNPC3Q96LT9 517 aaKnown RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 SLC7A5P2Q9GIP4 190 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 NMRK2Q9NPI5 230 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 SETD4Q9NVD3 440 aa11.52□□□□□ -0.57
NEDD9-201ENST00000379433 DNAJC17Q9NVM6 304 aaKnown RBP11.52□□□□□ -0.57
NEDD9-201ENST00000379433 IQCA1LA6NCM1 817 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 PGRMC1O00264 195 aaKnown RBP11.51□□□□□ -0.57
NEDD9-201ENST00000379433 HOXA2O43364 376 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 KRT38O76015 456 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 TPPPO94811 219 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 GLRA4Q5JXX5 417 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 MAATS1Q7Z4T9 603 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 OR2W6PQ8NHA6 318 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 TIPINQ9BVW5 301 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 GBA2Q9HCG7 927 aaPredicted RBP11.51□□□□□ -0.57
NEDD9-201ENST00000379433 CD248Q9HCU0 757 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 RAB21Q9UL25 225 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 TCRBV7S2A1N4TA0A589 114 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 GOLGA8SH3BPF8 625 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 DAPK3O43293 454 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 KRT14P02533 472 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 FOSL1P15407 271 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 GNA15P30679 374 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 ARL2P36404 184 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 RWDD2BP57060 319 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 SF3A3Q12874 501 aaKnown RBP eCLIP11.51□□□□□ -0.57
NEDD9-201ENST00000379433 DBN1Q16643 649 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 WDR72Q3MJ13 1102 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 KAZNQ674X7 775 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 SESTD1Q86VW0 696 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 SCFD2Q8WU76 684 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 MYPNQ86TC9 1320 aa11.51□□□□□ -0.57
NEDD9-201ENST00000379433 O00370 1275 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 VNN1O95497 513 aa11.5□□□□□ -0.57
NEDD9-201ENST00000379433 STIP1P31948 543 aaKnown RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 NSFP46459 744 aaKnown RBP11.5□□□□□ -0.57
NEDD9-201ENST00000379433 MMS22LQ6ZRQ5 1243 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms