RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 TMA16Q96EY4 203 aaKnown RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 ZNF512Q96ME7 567 aaPredicted RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 TRPC7Q9HCX4 862 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 ARHGEF38Q9NXL2 777 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 HOXC10Q9NYD6 342 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 A0A087X0T9 212 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 ZW10O43264 779 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 DTNBO60941 627 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 EZH2Q15910 746 aaKnown RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 ZNF658Q5TYW1 1059 aaPredicted RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 STKLD1Q8NE28 680 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 BHMT2Q9H2M3 363 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 LEMD3Q9Y2U8 911 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 DFFAO00273 331 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 PRRG1O14668 218 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 TRIM24O15164 1050 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 SRP72O76094 671 aaKnown RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 TPI1P60174 286 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 CASP8Q14790 479 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 SLC27A3Q5K4L6 730 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 ARMC4Q5T2S8 1044 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 SYDE2Q5VT97 1194 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 RSBN1Q5VWQ0 802 aaPredicted RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 ARMC3Q5W041 872 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 DDHD1Q8NEL9 900 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 OSBPL9Q96SU4 736 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 GPR63Q9BZJ6 419 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 FOXP1Q9H334 677 aaPredicted RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 MRPL39Q9NYK5 338 aaKnown RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 PI4KBQ9UBF8 816 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 PCDHA7Q9UN72 937 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 PLAAQ9Y263 795 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 SIK3Q9Y2K2 1263 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 PPIP5K1Q6PFW1 1433 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 AGLP35573 1532 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 IFNA14P01570 189 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 CNPP09543 421 aaKnown RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 CDH6P55285 790 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 SESN2P58004 480 aaPredicted RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 FAM102AQ5T9C2 384 aaPredicted RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 CYP4Z1Q86W10 505 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 PTPRN2Q92932 1015 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 CLIC6Q96NY7 704 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 KLHL11Q9NVR0 708 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 IP6K2Q9UHH9 426 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 USP21Q9UK80 565 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 VPS9D1Q9Y2B5 631 aa11.13□□□□□ -0.63
RTN3-206ENST00000377819 RBM7Q9Y580 266 aaKnown RBP11.13□□□□□ -0.63
RTN3-206ENST00000377819 TSC22D2O75157 780 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 BMP10O95393 424 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 CCDC166P0CW27 439 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 VCLP18206 1134 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 GPC3P51654 580 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 TTLL4Q14679 1199 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 HLA-DQA1Q5Y7H0 255 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 PGBD4Q96DM1 585 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 TGS1Q96RS0 853 aaKnown RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 HSPBP1Q9NZL4 362 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 DNAJC12Q9UKB3 198 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 GDAQ9Y2T3 454 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 SCGNO76038 276 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 NDUFA10O95299 355 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 CYP2C19P33261 490 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 USP10Q14694 798 aaKnown RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 ZMYND11Q15326 602 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 IL31Q6EBC2 164 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 THOC7Q6I9Y2 204 aaKnown RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 TRIM72Q6ZMU5 477 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 FOXP4Q8IVH2 680 aaPredicted RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 RHOT1Q8IXI2 618 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 IP6K1Q92551 441 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 KRT35Q92764 455 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 ZBTB40Q9NUA8 1239 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 ERVK-10P10266 1014 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 KDSRQ06136 332 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 CACNB2Q08289 660 aaPredicted RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 KCTD1Q719H9 257 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 SLC44A2Q8IWA5 706 aaPredicted RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 SYTL1Q8IYJ3 562 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 PABPC5Q96DU9 382 aaKnown RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 THUMPD3Q9BV44 507 aaKnown RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 EPC1Q9H2F5 836 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 PLEKHA5Q9HAU0 1116 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 GMNCA6NCL1 334 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 TAF4O00268 1085 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 PUDPQ08623 228 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 ORC2Q13416 577 aaPredicted RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 CAMK2GQ13555 558 aaPredicted RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 SNX17Q15036 470 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 SLC39A14Q15043 492 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 TRIP10Q15642 601 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 ZCCHC8Q6NZY4 707 aaKnown RBP11.12□□□□□ -0.63
RTN3-206ENST00000377819 BTN2A1Q7KYR7 527 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 TRPM8Q7Z2W7 1104 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 EYA1Q99502 592 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 C17orf80Q9BSJ5 609 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 SLITRK2Q9H156 845 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 RERGLQ9H628 205 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 AP4S1Q9Y587 144 aa11.12□□□□□ -0.63
RTN3-206ENST00000377819 ZMYM3Q14202 1370 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms