RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 ODC1P11926 461 aa14.33□□□□□ -0.11
GPC6-201ENST00000377047 PDCD2Q16342 344 aaPredicted RBP14.33□□□□□ -0.11
GPC6-201ENST00000377047 GLRA4Q5JXX5 417 aa14.33□□□□□ -0.11
GPC6-201ENST00000377047 AGR3Q8TD06 166 aa14.33□□□□□ -0.11
GPC6-201ENST00000377047 TMEM60Q9H2L4 133 aa14.33□□□□□ -0.11
GPC6-201ENST00000377047 FAM96AQ9H5X1 160 aa14.33□□□□□ -0.11
GPC6-201ENST00000377047 TMEM8AQ9HCN3 771 aa14.33□□□□□ -0.11
GPC6-201ENST00000377047 RIMBP3CA6NJZ7 1639 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 RIMBP3BA6NNM3 1639 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 RIMBP3Q9UFD9 1639 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 EIF3DO15371 548 aaKnown RBP eCLIP14.33□□□□□ -0.12
GPC6-201ENST00000377047 RHOBTB3O94955 611 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 RPA1P27694 616 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 TAF6P49848 677 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 TWF1Q12792 350 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 PDAP1Q13442 181 aaKnown RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 EFTUD2Q15029 972 aaKnown RBP eCLIP14.33□□□□□ -0.12
GPC6-201ENST00000377047 AMHR2Q16671 573 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 TDRD10Q5VZ19 366 aaKnown RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 CATSPER3Q86XQ3 398 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 BTBD6Q96KE9 485 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 LIMA1Q9UHB6 759 aaKnown RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 GPR182O15218 404 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 PSMD3O43242 534 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 ESRRGP62508 458 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 NBPF9Q3BBW0 867 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 SLITRK1Q96PX8 696 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 ENTPD7Q9NQZ7 604 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 ATP1A1P05023 1023 aaKnown RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 RFX5P48382 616 aaPredicted RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 ATN1P54259 1190 aaPredicted RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 ZDHHC15Q96MV8 337 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 MAP3K14Q99558 947 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 TPX2Q9ULW0 747 aaKnown RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 RPSAP08865 295 aaKnown RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 SKIP12755 728 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 GFAPP14136 432 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 UCHL3P15374 230 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 ETFBP38117 255 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 PPP4CP60510 307 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 STK4Q13043 487 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 PIGHQ14442 188 aaPredicted RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 E2F5Q15329 346 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 ZC3H15Q8WU90 426 aaKnown RBP14.33□□□□□ -0.12
GPC6-201ENST00000377047 TMEM169Q96HH4 297 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 DCTN4Q9UJW0 460 aa14.33□□□□□ -0.12
GPC6-201ENST00000377047 RGL2O15211 777 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 APRTP07741 180 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 NCAM1P13591 858 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 GTF2H1P32780 548 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 GCLCP48506 637 aaPredicted RBP14.32□□□□□ -0.12
GPC6-201ENST00000377047 NFIAQ12857 509 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 GRAMD1BQ3KR37 738 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 CCDC144BQ3MJ40 725 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 ANKS3Q6ZW76 656 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 TBC1D19Q8N5T2 526 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 FOPNLQ96NB1 174 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 TAF1DQ9H5J8 278 aaPredicted RBP14.32□□□□□ -0.12
GPC6-201ENST00000377047 CATSPERBQ9H7T0 1116 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 DPP3Q9NY33 737 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 FAF1Q9UNN5 650 aaPredicted RBP14.32□□□□□ -0.12
GPC6-201ENST00000377047 FAM95CA0A1B0GW59 222 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 TMEM259Q4ZIN3 620 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 GPAT2Q6NUI2 795 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 CHSY1Q86X52 802 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 SLC25A41Q8N5S1 370 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 RDM1Q8NG50 284 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 THEGQ9P2T0 379 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 ZFP69BQ9UJL9 534 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 FAM200BP0CF97 657 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 YY1P25490 414 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 DPF3Q92784 378 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 BHMTQ93088 406 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 TSPYL2Q9H2G4 693 aaPredicted RBP14.32□□□□□ -0.12
GPC6-201ENST00000377047 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.32□□□□□ -0.12
GPC6-201ENST00000377047 MSH4O15457 936 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 GYG2O15488 501 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 HIST1H2AGP0C0S8 130 aaPredicted RBP14.32□□□□□ -0.12
GPC6-201ENST00000377047 HIST1H2ADP20671 130 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 DHX34Q14147 1143 aaKnown RBP14.32□□□□□ -0.12
GPC6-201ENST00000377047 NBPF12Q5TAG4 269 aaPredicted RBP14.32□□□□□ -0.12
GPC6-201ENST00000377047 HIST1H2AHQ96KK5 128 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 HIST1H2AJQ99878 128 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 H2AFJQ9BTM1 129 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 MROH8Q9H579 483 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 SENP1Q9P0U3 644 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 FHOD1Q9Y613 1164 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 SLC30A1Q9Y6M5 507 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 BRAFP15056 766 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 FXR2P51116 673 aaKnown RBP eCLIP14.32□□□□□ -0.12
GPC6-201ENST00000377047 FMR1Q06787 632 aaKnown RBP eCLIP14.32□□□□□ -0.12
GPC6-201ENST00000377047 SEZ6Q53EL9 994 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 ATL2Q8NHH9 583 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 NIF3L1Q9GZT8 377 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 XAB2Q9HCS7 855 aaKnown RBP14.32□□□□□ -0.12
GPC6-201ENST00000377047 UVRAGQ9P2Y5 699 aa14.32□□□□□ -0.12
GPC6-201ENST00000377047 BRD2P25440 801 aaKnown RBP14.31□□□□□ -0.12
GPC6-201ENST00000377047 PNPLA4P41247 253 aa14.31□□□□□ -0.12
GPC6-201ENST00000377047 TAF11Q15544 211 aa14.31□□□□□ -0.12
GPC6-201ENST00000377047 HSP90AA5PQ58FG0 334 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms