RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 VOPP1Q96AW1 172 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 C11orf54Q9H0W9 315 aaPredicted RBP3□□□□□ -1.93
VPS13A-206ENST00000376646 GALNT9Q9HCQ5 603 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 IL17RBQ9NRM6 502 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 MKS1Q9NXB0 559 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 KCNE5Q9UJ90 142 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 CDYLQ9Y232 598 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 FAM171A2A8MVW0 826 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 GRM6O15303 877 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 XPOTO43592 962 aaKnown RBP3□□□□□ -1.93
VPS13A-206ENST00000376646 AGFG2O95081 481 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 MYBL2P10244 700 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 EDNRBP24530 442 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 CDKN1CP49918 316 aaPredicted RBP3□□□□□ -1.93
VPS13A-206ENST00000376646 CREMQ03060 361 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 FAPQ12884 760 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 ZNF169Q14929 603 aaPredicted RBP3□□□□□ -1.93
VPS13A-206ENST00000376646 TSHZ1Q6ZSZ6 1077 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 ARHGEF25Q86VW2 580 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 BOLLQ8N9W6 283 aaKnown RBP3□□□□□ -1.93
VPS13A-206ENST00000376646 Q8NA96 180 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 FAM98AQ8NCA5 519 aaKnown RBP3□□□□□ -1.93
VPS13A-206ENST00000376646 SSH3Q8TE77 659 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 TMEM125Q96AQ2 219 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 KIAA1586Q9HCI6 787 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 TBCCD1Q9NVR7 557 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 SERPINB13Q9UIV8 391 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 TRHDEQ9UKU6 1024 aa3□□□□□ -1.93
VPS13A-206ENST00000376646 K7ESF4 209 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 KATNA1O75449 491 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 CLSTN1O94985 981 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 VAV2P52735 878 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 C21orf58P58505 322 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 MC2RQ01718 297 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 MTMR1Q13613 665 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 PCBP2Q15366 365 aaKnown RBP eCLIP2.99□□□□□ -1.93
VPS13A-206ENST00000376646 SF3B3Q15393 1217 aaKnown RBP2.99□□□□□ -1.93
VPS13A-206ENST00000376646 CD300EQ496F6 205 aaPredicted RBP2.99□□□□□ -1.93
VPS13A-206ENST00000376646 UTP14CQ5TAP6 766 aaKnown RBP2.99□□□□□ -1.93
VPS13A-206ENST00000376646 RSPH3Q86UC2 560 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 IFI44Q8TCB0 444 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 CYFIP2Q96F07 1278 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 BOD1Q96IK1 185 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 LRFN3Q9BTN0 628 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 BRIP1Q9BX63 1249 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 MANSC1Q9H8J5 431 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 TMEM74BQ9NUR3 256 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 TDP1Q9NUW8 608 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 FAM30AQ9NZY2 134 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 TLK1Q9UKI8 766 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 ATP8A1Q9Y2Q0 1164 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 INSL6Q9Y581 213 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 LRRC3CA6NJW4 275 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 TRIM75PA6NK02 468 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 TEX33O43247 280 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 ALAS1P13196 640 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 CTXN1P60606 82 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 DACT2Q5SW24 774 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 ACTRT2Q8TDY3 377 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 NUP133Q8WUM0 1156 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 MTMR8Q96EF0 704 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 FAXDC2Q96IV6 333 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 LRIG1Q96JA1 1093 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 ASB6Q9NWX5 421 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 FOXJ2Q9P0K8 574 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 MCM8Q9UJA3 840 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 IPPQ9Y573 584 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 PCDHB1Q9Y5F3 818 aa2.99□□□□□ -1.93
VPS13A-206ENST00000376646 CCDC154A6NI56 674 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 HTRA2O43464 458 aaPredicted RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 C1QL1O75973 258 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 HAUS5O94927 633 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 MATN4O95460 622 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 CD1AP06126 327 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 GATA3P23771 443 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 MRPS35P82673 323 aaKnown RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 KIF23Q02241 960 aaPredicted RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 ITKQ08881 620 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 ODF1Q14990 250 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 ARMC6Q6NXE6 501 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 FAM43AQ8N2R8 423 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 ABCF1Q8NE71 845 aaKnown RBP eCLIP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 TMIEQ8NEW7 156 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 SLC30A5Q8TAD4 765 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 FUBP1Q96AE4 644 aaKnown RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 KLHL32Q96NJ5 620 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 PNKPQ96T60 521 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 KLK15Q9H2R5 256 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 KCTD5Q9NXV2 234 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 PRKAB1Q9Y478 270 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 SBNO2Q9Y2G9 1366 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 TRGV11A0A075B6L2 103 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 LRRC14BA6NHZ5 514 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 FZD9O00144 591 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 GABRDO14764 452 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 FBLP22087 321 aaKnown RBP2.98□□□□□ -1.93
VPS13A-206ENST00000376646 RARRES1P49788 294 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 GUCY2FP51841 1108 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 ERCC6LQ2NKX8 1250 aa2.98□□□□□ -1.93
VPS13A-206ENST00000376646 COLEC12Q5KU26 742 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms