RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 C6orf222P0C671 652 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 ST8SIA6P61647 398 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 ZRANB3Q5FWF4 1079 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 SGF29Q96ES7 293 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 CELF4Q9BZC1 486 aaKnown RBP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 GJB7Q6PEY0 223 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 THAP11Q96EK4 314 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 VPS50Q96JG6 964 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 LINC00854A0A1B0GVQ3 168 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 ANO9A1A5B4 782 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 NCF1BA6NI72 391 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 NCF1CA8MVU1 366 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 RSPH10B2B2RC85 870 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 RSPH10BP0C881 870 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 NCF1P14598 390 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 NME5P56597 212 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 WASHC5Q12768 1159 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 INPP5AQ14642 412 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 ZNF560Q96MR9 790 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 RBM15Q96T37 977 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 DNAJC7Q99615 494 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 WWP1Q9H0M0 922 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 GCC2Q8IWJ2 1684 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 FAM187AA6NFU0 413 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 CYTH3O43739 400 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 CAND2O75155 1236 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 RPS6KA4O75676 772 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 SHCBP1Q8NEM2 672 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 ZC3H15Q8WU90 426 aaKnown RBP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 VMP1Q96GC9 406 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 UGGT1Q9NYU2 1555 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 LOC100653049A0A140TA62 436 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 KCNQ2O43526 872 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 KRT34O76011 436 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 ZFXP17010 805 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 SEZ6Q53EL9 994 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL4A1-201ENST00000375820 CHMP1BQ7LBR1 199 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 EME1Q96AY2 570 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 ZFP42Q96MM3 310 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 REEP2Q9BRK0 252 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 BRD8Q9H0E9 1235 aa14.38□□□□□ -0.11
COL4A1-201ENST00000375820 ROBO2Q9HCK4 1378 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 H0Y626 953 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 TRIM16O95361 564 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 FMR1Q06787 632 aaKnown RBP eCLIP14.37□□□□□ -0.11
COL4A1-201ENST00000375820 STX3Q13277 289 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 TMEM132DQ14C87 1099 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 IYDQ6PHW0 289 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 TNIP3Q96KP6 325 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 NEU2Q9Y3R4 380 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 STK36Q9NRP7 1315 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 KRT87PA6NCN2 255 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 CYP2B6P20813 491 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 HORMAD1Q86X24 394 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 SPIRE2Q8WWL2 714 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 PKD2L2Q9NZM6 624 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 CYP27B1O15528 508 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 TBC1D4O60343 1298 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 APOA1P02647 267 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 MYL2P10916 166 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 MAPRE2Q15555 327 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 FAXCQ5TGI0 409 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 ERLEC1Q96DZ1 483 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 ZNF556Q9HAH1 456 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 A0A0G2JLW4 131 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 GGPS1O95749 300 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 GUCA1CO95843 209 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 ALDH1A1P00352 501 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 OR1G1P47890 313 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 PTK7Q13308 1070 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 BAATQ14032 418 aaPredicted RBP14.37□□□□□ -0.11
COL4A1-201ENST00000375820 DCAF6Q58WW2 860 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 PTRHD1Q6GMV3 140 aaKnown RBP14.37□□□□□ -0.11
COL4A1-201ENST00000375820 CAPRIN2Q6IMN6 1127 aaKnown RBP14.37□□□□□ -0.11
COL4A1-201ENST00000375820 MRPL1Q9BYD6 325 aaKnown RBP14.37□□□□□ -0.11
COL4A1-201ENST00000375820 DTNAQ9Y4J8 743 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 EN1Q05925 392 aaPredicted RBP14.37□□□□□ -0.11
COL4A1-201ENST00000375820 NCOA4Q13772 614 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 ATL2Q8NHH9 583 aa14.37□□□□□ -0.11
COL4A1-201ENST00000375820 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.37□□□□□ -0.11
COL4A1-201ENST00000375820 USP6P35125 1406 aa14.36□□□□□ -0.11
COL4A1-201ENST00000375820 SRP72O76094 671 aaKnown RBP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 ARHGEF7Q14155 803 aa14.36□□□□□ -0.11
COL4A1-201ENST00000375820 CHSY1Q86X52 802 aa14.36□□□□□ -0.11
COL4A1-201ENST00000375820 DDX42Q86XP3 938 aaKnown RBP eCLIP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 ZNF473Q8WTR7 871 aaKnown RBP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 KAT2BQ92831 832 aa14.36□□□□□ -0.11
COL4A1-201ENST00000375820 SENP7Q9BQF6 1050 aa14.36□□□□□ -0.11
COL4A1-201ENST00000375820 METTL5Q9NRN9 209 aaKnown RBP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 NFKBIL1Q9UBC1 381 aaPredicted RBP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 ENO4A6NNW6 628 aa14.36□□□□□ -0.11
COL4A1-201ENST00000375820 METTL16Q86W50 562 aaKnown RBP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 APOBEC3FQ8IUX4 373 aaKnown RBP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 SLC44A2Q8IWA5 706 aaPredicted RBP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 MAGEB10Q96LZ2 347 aaPredicted RBP14.36□□□□□ -0.11
COL4A1-201ENST00000375820 CNBD2Q96M20 576 aa14.36□□□□□ -0.11
COL4A1-201ENST00000375820 FOPNLQ96NB1 174 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms