RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 PDLIM2Q96JY6 352 aa5.58□□□□□ -1.52
USP48-202ENST00000374730 HAPLN2Q9GZV7 340 aa5.58□□□□□ -1.52
USP48-202ENST00000374730 PLA2G3Q9NZ20 509 aa5.58□□□□□ -1.52
USP48-202ENST00000374730 MTMR6Q9Y217 621 aa5.58□□□□□ -1.52
USP48-202ENST00000374730 ZNF831Q5JPB2 1677 aa5.58□□□□□ -1.52
USP48-202ENST00000374730 CHD4Q14839 1912 aa5.58□□□□□ -1.52
USP48-202ENST00000374730 RIC1Q4ADV7 1423 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 CDHR2Q9BYE9 1310 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 FSHBP01225 129 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 AMHP03971 560 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 A1BGP04217 495 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 PCCAP05165 728 aaPredicted RBP5.57□□□□□ -1.52
USP48-202ENST00000374730 CPA1P15085 419 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 PDCP20941 246 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 GJB2P29033 226 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 MSX2P35548 267 aaPredicted RBP5.57□□□□□ -1.52
USP48-202ENST00000374730 UBE2HP62256 183 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 FOXL1Q12952 345 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 ADAM15Q13444 863 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 TCIRG1Q13488 830 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 RIN1Q13671 783 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 GRM7Q14831 915 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 CFAP100Q494V2 611 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 MCMDC2Q4G0Z9 681 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 ZNF662Q6ZS27 426 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 BMP8AQ7Z5Y6 402 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 HOMER1Q86YM7 354 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 NKD2Q969F2 451 aaPredicted RBP5.57□□□□□ -1.52
USP48-202ENST00000374730 TRIM44Q96DX7 344 aaPredicted RBP5.57□□□□□ -1.52
USP48-202ENST00000374730 TMX1Q9H3N1 280 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 HELLSQ9NRZ9 838 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 TMOD3Q9NYL9 352 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 DENND2AQ9ULE3 1009 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 TPCN1Q9ULQ1 816 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 SPO11Q9Y5K1 396 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 MYO5AQ9Y4I1 1855 aaKnown RBP5.57□□□□□ -1.52
USP48-202ENST00000374730 A0A1B0GUL6 1792 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 BCORQ6W2J9 1755 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 CASZ1Q86V15 1759 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 COL5A3P25940 1745 aaPredicted RBP5.57□□□□□ -1.52
USP48-202ENST00000374730 BCL9O00512 1426 aa5.57□□□□□ -1.52
USP48-202ENST00000374730 ELP1O95163 1332 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 SYCE3A1L190 88 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 LETM1O95202 739 aaPredicted RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 ACRV1P26436 265 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 ADCY7P51828 1080 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 BCAR1P56945 870 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 EVA1CP58658 441 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 FOXE3Q13461 319 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 TOB2Q14106 344 aaPredicted RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 NRN1LQ496H8 165 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 USP39Q53GS9 565 aaKnown RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 HSP90AB3PQ58FF7 597 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 CCDC183Q5T5S1 534 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 PRAMEF9Q5VWM5 478 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 KIF6Q6ZMV9 814 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 DDX46Q7L014 1031 aaKnown RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 ZZZ3Q8IYH5 903 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 ZNF808Q8N4W9 903 aaPredicted RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 FAM184AQ8NB25 1140 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 RPGRQ92834 1020 aaKnown RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 GTF3C6Q969F1 213 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 ZNF503Q96F45 646 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 EDC3Q96F86 508 aaKnown RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 RNPC3Q96LT9 517 aaKnown RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 SORCS2Q96PQ0 1159 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 NEK1Q96PY6 1258 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 SCAND2PQ9GZW5 306 aaPredicted RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 SLC6A15Q9H2J7 730 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 TSPY26PQ9H489 355 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 PIF1Q9H611 641 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 METTL14Q9HCE5 456 aaKnown RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 POLR3BQ9NW08 1133 aaPredicted RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 PAG1Q9NWQ8 432 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 AURKAIP1Q9NWT8 199 aaPredicted RBP5.56□□□□□ -1.52
USP48-202ENST00000374730 CNPY2Q9Y2B0 182 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 ATRNO75882 1429 aa5.56□□□□□ -1.52
USP48-202ENST00000374730 KAT6BQ8WYB5 2073 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 MAST3O60307 1309 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 MAP3K15Q6ZN16 1313 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 C4AP0C0L4 1744 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 C4BP0C0L5 1744 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 A0A1B0GUL7 405 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 MAFGO15525 162 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 STARD3NLO95772 234 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 CSF1RP07333 972 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 ZFYP08048 801 aaPredicted RBP5.55□□□□□ -1.52
USP48-202ENST00000374730 CYP21A2P08686 494 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 IFIT1P09914 478 aaKnown RBP5.55□□□□□ -1.52
USP48-202ENST00000374730 POU3F2P20265 443 aaPredicted RBP5.55□□□□□ -1.52
USP48-202ENST00000374730 PTX3P26022 381 aaPredicted RBP5.55□□□□□ -1.52
USP48-202ENST00000374730 HHEXQ03014 270 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 GAGE13Q4V321 117 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 ESRP1Q6NXG1 681 aaKnown RBP5.55□□□□□ -1.52
USP48-202ENST00000374730 C16orf86Q6ZW13 317 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 ZSCAN30Q86W11 494 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 PHYKPLQ8IUZ5 450 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 DNAJC10Q8IXB1 793 aa5.55□□□□□ -1.52
USP48-202ENST00000374730 GCDHQ92947 438 aaPredicted RBP5.55□□□□□ -1.52
USP48-202ENST00000374730 TUBGCP5Q96RT8 1024 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms