RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 C3orf58Q8NDZ4 430 aa15.2■□□□□ 0.02
VPS29-201ENST00000360579 TCEAL4Q96EI5 215 aa15.2■□□□□ 0.02
VPS29-201ENST00000360579 CCDC94Q9BW85 323 aaPredicted RBP15.2■□□□□ 0.02
VPS29-201ENST00000360579 GOLGA2P5Q9HBQ8 144 aa15.2■□□□□ 0.02
VPS29-201ENST00000360579 MAP1BP46821 2468 aaKnown RBP15.2■□□□□ 0.02
VPS29-201ENST00000360579 PODXLO00592 558 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 EDN1P05305 212 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 CHRNB1P11230 501 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 IGFBP6P24592 240 aaPredicted RBP15.19■□□□□ 0.02
VPS29-201ENST00000360579 RPL9P32969 192 aaKnown RBP15.19■□□□□ 0.02
VPS29-201ENST00000360579 GRM5P41594 1212 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 ARPP19P56211 112 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 SATB1Q01826 763 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 XKR4Q5GH76 650 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 LONP2Q86WA8 852 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 CSGALNACT1Q8TDX6 532 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 KIFAP3Q92845 792 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 ASAH2Q9NR71 780 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 AFF4Q9UHB7 1163 aaKnown RBP15.19■□□□□ 0.02
VPS29-201ENST00000360579 TNFSF13BQ9Y275 285 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 USP20Q9Y2K6 914 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 NUB1Q9Y5A7 615 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 CFAP47Q6ZTR5 3102 aa15.19■□□□□ 0.02
VPS29-201ENST00000360579 PHLPP2Q6ZVD8 1323 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 CHD6Q8TD26 2715 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 MED24O75448 989 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 SEC24AO95486 1093 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 MUTP22033 750 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 CCNE1P24864 410 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 RPA1P27694 616 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 CCR2P41597 374 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 EPHA5P54756 1037 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 PTGDRQ13258 359 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 TRIM29Q14134 588 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 MRPL58Q14197 206 aaKnown RBP15.18■□□□□ 0.02
VPS29-201ENST00000360579 ANKRD1Q15327 319 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 NT5DC1Q5TFE4 455 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 ZNF280DQ6N043 979 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 YAF2Q8IY57 180 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 APPL2Q8NEU8 664 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 ZSCAN18Q8TBC5 510 aaPredicted RBP15.18■□□□□ 0.02
VPS29-201ENST00000360579 C8orf33Q9H7E9 229 aaPredicted RBP15.18■□□□□ 0.02
VPS29-201ENST00000360579 FBXL5Q9UKA1 691 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 TPCN1Q9ULQ1 816 aa15.18■□□□□ 0.02
VPS29-201ENST00000360579 USP24Q9UPU5 2620 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 BTBD18B2RXH4 712 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 CHURC1-FNTBB4DL54 471 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 K7ERI5 159 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 CTDNEP1O95476 244 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 VIPR2P41587 438 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 FNTBP49356 437 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 SOX4Q06945 474 aaPredicted RBP15.17■□□□□ 0.02
VPS29-201ENST00000360579 TWF1Q12792 350 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 CTXN3Q4LDR2 81 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 DGKKQ5KSL6 1271 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 HAUS3Q68CZ6 603 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 IL31Q6EBC2 164 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 ALKAL1Q6UXT8 129 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 DIS3L2Q8IYB7 885 aaKnown RBP15.17■□□□□ 0.02
VPS29-201ENST00000360579 ZSWIM3Q96MP5 696 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 KIFC3Q9BVG8 833 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 SLITRK6Q9H5Y7 841 aa15.17■□□□□ 0.02
VPS29-201ENST00000360579 HEPACAM2A8MVW5 462 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 ARNTLO00327 626 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 CHADO15335 359 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 HRO43593 1189 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 MYL4P12829 197 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 FDPSP14324 419 aaKnown RBP15.16■□□□□ 0.02
VPS29-201ENST00000360579 KCNE1P15382 129 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 HOXA6P31267 233 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 KPNA1P52294 538 aaPredicted RBP15.16■□□□□ 0.02
VPS29-201ENST00000360579 PLD1Q13393 1074 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 ZNF568Q3ZCX4 644 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 CEP68Q76N32 757 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 HS6ST3Q8IZP7 471 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 FAM200AQ8TCP9 573 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 MS4A3Q96HJ5 214 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 SUSD3Q96L08 255 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 OXCT2Q9BYC2 517 aaPredicted RBP15.16■□□□□ 0.02
VPS29-201ENST00000360579 CDT1Q9H211 546 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 TMEM60Q9H2L4 133 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 CEP72Q9P209 647 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 ANGPTL2Q9UKU9 493 aa15.16■□□□□ 0.02
VPS29-201ENST00000360579 K7ESF4 209 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 WNT7AO00755 349 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 NRG2O14511 850 aaPredicted RBP15.15■□□□□ 0.02
VPS29-201ENST00000360579 MOSPD3O75425 235 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 CPB1P15086 417 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 MCM7P33993 719 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 VASPP50552 380 aaPredicted RBP15.15■□□□□ 0.02
VPS29-201ENST00000360579 LIMK1P53667 647 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 DMWDQ09019 674 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 FCHO2Q0JRZ9 810 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 ORC2Q13416 577 aaPredicted RBP15.15■□□□□ 0.02
VPS29-201ENST00000360579 GAS6Q14393 721 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 RALGPS2Q86X27 583 aaPredicted RBP15.15■□□□□ 0.02
VPS29-201ENST00000360579 SYNPOQ8N3V7 929 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 CEP120Q8N960 986 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 ACAP3Q96P50 834 aa15.15■□□□□ 0.02
VPS29-201ENST00000360579 ACO2Q99798 780 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms