RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 AKR1B10O60218 316 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 CLSTN1O94985 981 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 LCA5LO95447 670 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 ACO1P21399 889 aaKnown RBP19.99■□□□□ 0.79
CLN3-206ENST00000360019 GFPT1Q06210 699 aaPredicted RBP19.99■□□□□ 0.79
CLN3-206ENST00000360019 C1orf53Q5VUE5 145 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 MRPL10Q7Z7H8 261 aaKnown RBP19.99■□□□□ 0.79
CLN3-206ENST00000360019 ANKLE1Q8NAG6 615 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 LPPQ93052 612 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 ZFP42Q96MM3 310 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 A0A0U1RQF3 1178 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 ZNF623O75123 536 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 ITGA4P13612 1032 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 ATF7P17544 494 aaPredicted RBP19.98■□□□□ 0.79
CLN3-206ENST00000360019 TBXAS1P24557 533 aaPredicted RBP19.98■□□□□ 0.79
CLN3-206ENST00000360019 USP8P40818 1118 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 CYP27A1Q02318 531 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 TLE2Q04725 743 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 FAAP100Q0VG06 881 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 TAF4BQ92750 862 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 SYT11Q9BT88 431 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 NIF3L1Q9GZT8 377 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 ADAMTS1Q9UHI8 967 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 AGAP1Q9UPQ3 857 aa19.98■□□□□ 0.79
CLN3-206ENST00000360019 PTGESO14684 152 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 CYP26A1O43174 497 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 NBNO60934 754 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 CCDC172P0C7W6 258 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 CLCN1P35523 988 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 ASPAP45381 313 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 RAB27AP51159 221 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 AGMOQ6ZNB7 445 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 HACE1Q8IYU2 909 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 LINC01599Q8WXQ3 324 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 JAKMIP2Q96AA8 810 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 TOX2Q96NM4 488 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 VRTNQ9H8Y1 702 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 ACP6Q9NPH0 428 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 UBQLN1Q9UMX0 589 aaKnown RBP19.97■□□□□ 0.79
CLN3-206ENST00000360019 A0A087X0T9 212 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 CCP110O43303 1012 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 FAM228BP0C875 321 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 MLH1P40692 756 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 SLC18A3Q16572 532 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 RTN4RL1Q86UN2 441 aaPredicted RBP19.97■□□□□ 0.79
CLN3-206ENST00000360019 UBR7Q8N806 425 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 GSTCDQ8NEC7 633 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 BEST2Q8NFU1 509 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 PAWRQ96IZ0 340 aaKnown RBP19.97■□□□□ 0.79
CLN3-206ENST00000360019 TSPAN18Q96SJ8 248 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 POLIQ9UNA4 740 aa19.97■□□□□ 0.79
CLN3-206ENST00000360019 DCDC2CA8MYV0 355 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 PPEF2O14830 753 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 KRT5P13647 590 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 ATICP31939 592 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 AFF1P51825 1210 aaKnown RBP19.96■□□□□ 0.79
CLN3-206ENST00000360019 KRT83P78385 493 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 RBP5P82980 135 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 SOX4Q06945 474 aaPredicted RBP19.96■□□□□ 0.79
CLN3-206ENST00000360019 SLC47A2Q86VL8 602 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 EPS8L1Q8TE68 723 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 HPDLQ96IR7 371 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 GAD1Q99259 594 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.96■□□□□ 0.79
CLN3-206ENST00000360019 RGS18Q9NS28 235 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 NXF1Q9UBU9 619 aaKnown RBP19.96■□□□□ 0.79
CLN3-206ENST00000360019 TFR2Q9UP52 801 aa19.96■□□□□ 0.79
CLN3-206ENST00000360019 IPO7O95373 1038 aaKnown RBP19.95■□□□□ 0.78
CLN3-206ENST00000360019 STAU1O95793 577 aaKnown RBP19.95■□□□□ 0.78
CLN3-206ENST00000360019 ANXA13P27216 316 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 SPA17Q15506 151 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 WDR72Q3MJ13 1102 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 ZNF667Q5HYK9 610 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 SCARA5Q6ZMJ2 495 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 NYAP1Q6ZVC0 841 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 SLC20A1Q8WUM9 679 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 PPP1R10Q96QC0 940 aaKnown RBP19.95■□□□□ 0.78
CLN3-206ENST00000360019 HIPK3Q9H422 1215 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 C11orf49Q9H6J7 331 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 NOCTQ9UK39 431 aaKnown RBP19.95■□□□□ 0.78
CLN3-206ENST00000360019 GIT1Q9Y2X7 761 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 ARL5CA6NH57 179 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 DDX3XO00571 662 aaKnown RBP eCLIP19.95■□□□□ 0.783e-8■■■□□ 15.1
CLN3-206ENST00000360019 OFD1O75665 1012 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 ABL1P00519 1130 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 PLEKHG4Q58EX7 1191 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 C9orf57Q5W0N0 161 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 ZNF598Q86UK7 904 aaKnown RBP19.95■□□□□ 0.78
CLN3-206ENST00000360019 ECHDC2Q86YB7 292 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 LNX1Q8TBB1 728 aaPredicted RBP19.95■□□□□ 0.78
CLN3-206ENST00000360019 C16orf45Q96MC5 204 aaPredicted RBP19.95■□□□□ 0.78
CLN3-206ENST00000360019 WNT8AQ9H1J5 351 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 GOLGA2P5Q9HBQ8 144 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 NENFQ9UMX5 172 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 CNTN6Q9UQ52 1028 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 ATP11BQ9Y2G3 1177 aa19.95■□□□□ 0.78
CLN3-206ENST00000360019 SCN1AP35498 2009 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 ANO9A1A5B4 782 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 RCCD1A6NED2 376 aa19.94■□□□□ 0.78
CLN3-206ENST00000360019 C9IYK1 514 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms