RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 NMRK1Q9NWW6 199 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 PKP3Q9Y446 797 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 LAMC1P11047 1609 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 PRAMEF22A3QJZ6 481 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 NPM3O75607 178 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 SLC25A27O95847 323 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 MYCP01106 439 aaPredicted RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 SLC9A1P19634 815 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 RGS2P41220 211 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 NCKAP1LP55160 1127 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 CENPCQ03188 943 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 SKIV2LQ15477 1246 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 LINC00523Q86TU6 105 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 STAG2Q8N3U4 1231 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 FAM162AQ96A26 154 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 OTULINQ96BN8 352 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 YIPF2Q9BWQ6 316 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 VPS33BQ9H267 617 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 ADNPQ9H2P0 1102 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 STN1Q9H668 368 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 SCN3BQ9NY72 215 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 SATB2Q9UPW6 733 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 ITIH6Q6UXX5 1313 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 IMPDH2P12268 514 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 PRDX5P30044 214 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 PLA2G4AP47712 749 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 NPEPPSP55786 919 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 STX3Q13277 289 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 SNAPC2Q13487 334 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 COG2Q14746 738 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 MAPRE1Q15691 268 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 CNGA3Q16281 694 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 DEPDC1Q5TB30 811 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 TTC39BQ5VTQ0 682 aaPredicted RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 ADCK2Q7Z695 626 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 HORMAD1Q86X24 394 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 C1orf54Q8WWF1 131 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 ZFYVE28Q9HCC9 887 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 SMARCAL1Q9NZC9 954 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 CD274Q9NZQ7 290 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 LIMA1Q9UHB6 759 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 ZNF229Q9UJW7 825 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 FBXL5Q9UKA1 691 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 ADAM21Q9UKJ8 722 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 CAB39Q9Y376 341 aaPredicted RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 ADGRG1Q9Y653 693 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 PDS5AQ29RF7 1337 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 SNTNA6NMZ2 147 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 GOLGA8RI6L899 631 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 ITGA4P13612 1032 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 PPP3CCP48454 512 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 HSPA13P48723 471 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 USP10Q14694 798 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 EFHC1Q5JVL4 640 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 DAB2IPQ5VWQ8 1189 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 GLYCTKQ8IVS8 523 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 GPR101Q96P66 508 aaPredicted RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 VIPAS39Q9H9C1 493 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 RSAD1Q9HA92 442 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 ZSCAN32Q9NX65 697 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 AGAP1Q9UPQ3 857 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 MTO1Q9Y2Z2 717 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 MRFAP1Q9Y605 127 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 SPACA6W5XKT8 324 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 HECW2Q9P2P5 1572 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 ROBO2Q9HCK4 1378 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 ARHGEF40Q8TER5 1519 aa6.77□□□□□ -1.32
UPF2-201ENST00000356352 SSU72P8A0A1W2PR75 194 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 VGLL3A8MV65 326 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 MAFGO15525 162 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 SERPIND1P05546 499 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 POLBP06746 335 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 CACNB3P54284 484 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 ZNF200P98182 395 aaPredicted RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 PHKG1Q16816 387 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 FAM9CQ8IZT9 166 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 TEX13BQ9BXU2 312 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 OSBPL1AQ9BXW6 950 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 ROPN1BQ9BZX4 212 aaPredicted RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 ROPN1Q9HAT0 212 aaPredicted RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 AAASQ9NRG9 546 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 ZC3H7BQ9UGR2 993 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 SEPT3Q9UH03 358 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 XPO7Q9UIA9 1087 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.77□□□□□ -1.33
UPF2-201ENST00000356352 RRN3P2A6NIE6 340 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 TRPC5OSA6NMA1 111 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 SUPT3HB4E1H0 165 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 CDH16O75309 829 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 RPLP2P05387 115 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 CYP2C8P10632 490 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 SLC2A3P11169 496 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 HARS2P49590 506 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 ALDH18A1P54886 795 aaKnown RBP6.77□□□□□ -1.33
UPF2-201ENST00000356352 KCNK10P57789 538 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 KBTBD12Q3ZCT8 623 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 AGBL2Q5U5Z8 902 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 IL31Q6EBC2 164 aa6.77□□□□□ -1.33
UPF2-201ENST00000356352 SHCBP1Q8NEM2 672 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms