RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 REXO2Q9Y3B8 237 aaKnown RBP10.8□□□□□ -0.68
SYNE1-203ENST00000354674 BZW2Q9Y6E2 419 aaKnown RBP10.8□□□□□ -0.68
SYNE1-203ENST00000354674 SLC16A3O15427 465 aaKnown RBP10.8□□□□□ -0.68
SYNE1-203ENST00000354674 MAGEB2O15479 319 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 IFNAR2P48551 515 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 ERFP50548 548 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 DEUP1Q05D60 604 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 MPP3Q13368 585 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 MARCH8Q5T0T0 291 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 AP5M1Q9H0R1 490 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 IKZF4Q9H2S9 585 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 TMEM134Q9H6X4 195 aa10.8□□□□□ -0.68
SYNE1-203ENST00000354674 EPN1Q9Y6I3 576 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-203ENST00000354674 CCDC169A6NNP5 214 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 LGALS16A8MUM7 142 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 CETN3O15182 167 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 NR2F2P24468 414 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 RPL13P26373 211 aaKnown RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 PRMT2P55345 433 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 CAPSQ13938 189 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 MXD4Q14582 209 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 TMEM154Q6P9G4 183 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 HOOK3Q86VS8 718 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 ZNF296Q8WUU4 475 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 TRAPPC12Q8WVT3 735 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 PRPF31Q8WWY3 499 aaKnown RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 KIFC3Q9BVG8 833 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 EBF2Q9HAK2 575 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 STIM2Q9P246 746 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 AGAP1Q9UPQ3 857 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 DENND3A2RUS2 1198 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 KPNA6O60684 536 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 PIGRP01833 764 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 HMGCRP04035 888 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 TUBBP07437 444 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 ETS2P15036 469 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 FERP16591 822 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 HOXC8P31273 242 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 POU5F1BQ06416 359 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 FSCN1Q16658 493 aaKnown RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 FRMD5Q7Z6J6 570 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 SPATS2Q86XZ4 545 aaKnown RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 TRIM59Q8IWR1 403 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 MKNK1Q9BUB5 465 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 GALNT8Q9NY28 637 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 PLAAQ9Y263 795 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 ITIH6Q6UXX5 1313 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 GLI1P08151 1106 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 ADAM17P78536 824 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 BLMHQ13867 455 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 BRDTQ58F21 947 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 GKAP1Q5VSY0 366 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 MTHFD1LQ6UB35 978 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 HS2ST1Q7LGA3 356 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 YTHDF3Q7Z739 585 aaKnown RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 MFN1Q8IWA4 741 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 PHC3Q8NDX5 983 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 ABTB1Q969K4 478 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 PANX2Q96RD6 677 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 NFKBIZQ9BYH8 718 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 CCDC113Q9H0I3 377 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 NOVA2Q9UNW9 492 aaKnown RBP10.79□□□□□ -0.68
SYNE1-203ENST00000354674 EXOC7Q9UPT5 735 aa10.79□□□□□ -0.68
SYNE1-203ENST00000354674 RRN3P2A6NIE6 340 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 ASAP2O43150 1006 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 ADCY3O60266 1144 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 ADAMTS4O75173 837 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 AKAP3O75969 853 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 SHBGP04278 402 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 KLRC1P26715 233 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 PURAQ00577 322 aaKnown RBP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 LAMTOR4Q0VGL1 99 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 XRCC4Q13426 336 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 BYSLQ13895 437 aaKnown RBP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 ARHGEF6Q15052 776 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 GRIK4Q16099 956 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 MAN2A1Q16706 1144 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 EFCAB12Q6NXP0 572 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 RETREG2Q8NC44 543 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 PSPC1Q8WXF1 523 aaKnown RBP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 RAPGEF5Q92565 580 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 ELAC2Q9BQ52 826 aaKnown RBP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 LRRC4CQ9HCJ2 640 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 CNOT8Q9UFF9 292 aaKnown RBP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 STYXL1Q9Y6J8 313 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 HTTP42858 3142 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 A0A1W2PQC6 194 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 MBLAC1A4D2B0 266 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 GOLGA6L10A6NI86 522 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 CLIC2O15247 247 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 MAPK13O15264 365 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 NDUFA10O95299 355 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 PRKAR2AP13861 404 aaKnown RBP10.78□□□□□ -0.68
SYNE1-203ENST00000354674 ELNP15502 786 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 ADSSP30520 456 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 MFSD10Q14728 455 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 VWA3BQ502W6 1294 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 C8orf74Q6P047 294 aa10.78□□□□□ -0.68
SYNE1-203ENST00000354674 SLC39A4Q6P5W5 647 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms