RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SERHL2Q9H4I8 314 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 SERHLQ9NQF3 203 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF710Q8N1W2 664 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 SKA2Q8WVK7 121 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 DCAF5Q96JK2 942 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 CHID1Q9BWS9 393 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 C20orf96Q9NUD7 363 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ARHGEF40Q8TER5 1519 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF518AQ6AHZ1 1483 aa13.2□□□□□ -0.3
COL6A3-203ENST00000353578 STX11O75558 287 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 MYL2P10916 166 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 PTGS2P35354 604 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 TECP42680 631 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 C12orf60Q5U649 245 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 SHQ1Q6PI26 577 aaKnown RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 CDHR1Q96JP9 859 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 BTBD18B2RXH4 712 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 RPRD1BQ9NQG5 326 aaKnown RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 TRIM17Q9Y577 477 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF200P98182 395 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 SCYL2Q6P3W7 929 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 RRM2BQ7LG56 351 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 NET1Q7Z628 596 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 DCLK2Q8N568 766 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 EFHBQ8N7U6 833 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 ZIM3Q96PE6 472 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 DCLK3Q9C098 648 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 STN1Q9H668 368 aaKnown RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 PHF11Q9UIL8 331 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 ASAP1Q9ULH1 1129 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 RAPGEF3O95398 923 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 KRT19P08727 400 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 HSD17B3P37058 310 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 STK4Q13043 487 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 ARHGAP17Q68EM7 881 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 TSPAN18Q96SJ8 248 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 ATP5J2-PTCD1G3V325 749 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 C6orf229H3BNL8 230 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 PTCD1O75127 700 aaKnown RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 CCDC60Q8IWA6 550 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 FSD1LQ9BXM9 530 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 TMBIM4Q9HC24 238 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 KRT17Q04695 432 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 BTBD10Q9BSF8 475 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 TRIM54Q9BYV2 358 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 PIH1D3Q9NQM4 214 aaKnown RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 PNPLA3Q9NST1 481 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 SRGAP2O75044 1071 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 SEC24DO94855 1032 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 XPAP23025 273 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 TARSP26639 723 aaKnown RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 HK2P52789 917 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 NCAPHQ15003 741 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 ECM2O94769 699 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 CIITAP33076 1130 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 MIGA2Q7L4E1 593 aa13.19□□□□□ -0.3
COL6A3-203ENST00000353578 TMA7Q9Y2S6 64 aaKnown RBP13.19□□□□□ -0.3
COL6A3-203ENST00000353578 NPTXRO95502 500 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 LDHAP00338 332 aaKnown RBP13.18□□□□□ -0.3
COL6A3-203ENST00000353578 GMFBP60983 142 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 PMF1Q6P1K2 205 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ACAP3Q96P50 834 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 SLC24A2Q9UI40 661 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ATF6P18850 670 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ATP13A5Q4VNC0 1218 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 JDP2Q8WYK2 163 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 UBXN6Q9BZV1 441 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 MRPL11Q9Y3B7 192 aaKnown RBP13.18□□□□□ -0.3
COL6A3-203ENST00000353578 POLR2MP0CAP2 368 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 MAGEA10P43363 369 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-203ENST00000353578 LRRC6Q86X45 466 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 AHI1Q8N157 1196 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 KYQ8NBH2 561 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 DDX47Q9H0S4 455 aaKnown RBP13.18□□□□□ -0.3
COL6A3-203ENST00000353578 UBE2TQ9NPD8 197 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-203ENST00000353578 AP3M2P53677 418 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 IYDQ6PHW0 289 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 CHURC1Q8WUH1 139 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 PALD1Q9ULE6 856 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 KIAA1024Q9UPX6 916 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 MYH13Q9UKX3 1938 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ARPC4-TTLL3A0A0A6YYG9 625 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 KIAA0391O15091 583 aaKnown RBP13.18□□□□□ -0.3
COL6A3-203ENST00000353578 TAF5LO75529 589 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ENPEPQ07075 957 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 NAB2Q15742 525 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 STRA8Q7Z7C7 330 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 KIF2BQ8N4N8 673 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 GJA10Q969M2 543 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 COX4I2Q96KJ9 171 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 PAIP1Q9H074 479 aaKnown RBP13.18□□□□□ -0.3
COL6A3-203ENST00000353578 EHD1Q9H4M9 534 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 MTSS1O43312 755 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ACLYP53396 1101 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 NPEPPSP55786 919 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 AADATQ8N5Z0 425 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 SPATA2Q9UM82 520 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ZBTB39O15060 712 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 KCNT1Q5JUK3 1230 aa13.18□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF618Q5T7W0 954 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms