RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ARHGEF4Q9NR80 690 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 AGPAT3Q9NRZ7 376 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 STK32BQ9NY57 414 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ATXN10Q9UBB4 475 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 HEY2Q9UBP5 337 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ZNF212Q9UDV6 495 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 UMODL1Q5DID0 1318 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ATRNL1Q5VV63 1379 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ZNFX1Q9P2E3 1918 aaKnown RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 ABCA3Q99758 1704 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 GSTTP1A0A1W2PQM5 241 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ZBTB39O15060 712 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ZSCAN9O15535 394 aaPredicted RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 HAUS5O94927 633 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 GAS8O95995 478 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 KRT15P19012 456 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ADRA1DP25100 572 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 PIK3CAP42336 1068 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 BTDP43251 543 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ERFP50548 548 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 FMO1Q01740 532 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 BFSP1Q12934 665 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 NR1H3Q13133 447 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 LSAMPQ13449 338 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 LIN52Q52LA3 116 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 RASIP1Q5U651 963 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 HHATQ5VTY9 493 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 DAB2IPQ5VWQ8 1189 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 PCNX4Q63HM2 1172 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 RINT1Q6NUQ1 792 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 TTC7BQ86TV6 843 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 SLC47A2Q86VL8 602 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 TDRPQ86YL5 185 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 SLFN12Q8IYM2 578 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 PPFIBP2Q8ND30 876 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 FBXO27Q8NI29 283 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ZNF398Q8TD17 642 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 ZNF653Q96CK0 615 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 MRRFQ96E11 262 aaKnown RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 SMC6Q96SB8 1091 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 KCNK13Q9HB14 408 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 SMG5Q9UPR3 1016 aaKnown RBP7.2□□□□□ -1.26
VPS39-202ENST00000348544 SLC4A7Q9Y6M7 1214 aa7.2□□□□□ -1.26
VPS39-202ENST00000348544 STRCP1A6NGW2 1772 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 SBF2Q86WG5 1849 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 A0A0G2JND7 137 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 WDR91A4D1P6 747 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 C2orf71A6NGG8 1288 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 EML1O00423 815 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 RNASEH1O60930 286 aaKnown RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 ZWINTO95229 277 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 FAM163BP0C2L3 166 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 GZMAP12544 262 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 AKR1B1P15121 316 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 SERPINB3P29508 390 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 CCNFP41002 786 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 GRIA2P42262 883 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 CDK7P50613 346 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 PPP3CAQ08209 521 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 IZUMO2Q6UXV1 221 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 SLC30A10Q6XR72 485 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 CAPN12Q6ZSI9 719 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 CADPS2Q86UW7 1296 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 NCAPG2Q86XI2 1143 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 SCYL3Q8IZE3 742 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 SYCP3Q8IZU3 236 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 ZCCHC9Q8N567 271 aaKnown RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 MYCT1Q8N699 235 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 GLIS1Q8NBF1 620 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 SKA1Q96BD8 255 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 NSL1Q96IY1 281 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 HEMGNQ9BXL5 484 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 SAYSD1Q9NPB0 183 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 DNAAF2Q9NVR5 837 aaKnown RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 SLAIN2Q9P270 581 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 ANKFY1Q9P2R3 1169 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 GTF3C4Q9UKN8 822 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 VAV3Q9UKW4 847 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 RABGAP1Q9Y3P9 1069 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 EMSYQ7Z589 1322 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 TNRC6CQ9HCJ0 1690 aaKnown RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 IGKV6D-41A0A0C4DH26 115 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 FAM86B1E9PN63 330 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 F5H6K3 240 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 ZBTB5O15062 677 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 CYP26A1O43174 497 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 ZBED4O75132 1171 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 FAM13AO94988 1023 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 PENKP01210 267 aaPredicted RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 FAM86B2P0C5J1 330 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 RARBP10826 455 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 BCRP11274 1271 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 PLS3P13797 630 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 RFX1P22670 979 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 KLRC2P26717 231 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 CETN2P41208 172 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 KLF1Q13351 362 aaPredicted RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 SLC15A2Q16348 729 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 CCDC142Q17RM4 750 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 P3H1Q32P28 736 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms