RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 SPATC1LQ9H0A9 340 aa16.46■□□□□ 0.23
UPF3B-202ENST00000345865 AAASQ9NRG9 546 aa16.46■□□□□ 0.23
UPF3B-202ENST00000345865 ADAM22Q9P0K1 906 aa16.46■□□□□ 0.23
UPF3B-202ENST00000345865 PASKQ96RG2 1323 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 MSCO60682 206 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 FAM107AO95990 144 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 IVDP26440 423 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 RFC5P40937 340 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 SLC1A1P43005 524 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 MAGEA9P43362 315 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 KRT17Q04695 432 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 MMS22LQ6ZRQ5 1243 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 ZBTB33Q86T24 672 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 TRIM50Q86XT4 487 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 HEMGNQ9BXL5 484 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 PARP2Q9UGN5 583 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 OTOFQ9HC10 1997 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 TLDC2A0PJX2 215 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 SMIM23A6NLE4 172 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 RIPK2O43353 540 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 TRAPPC3O43617 180 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 MARK3P27448 753 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 NF2P35240 595 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 PPP1R7Q15435 360 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 ZNF568Q3ZCX4 644 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 GPC2Q8N158 579 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 RAPGEF5Q92565 580 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 TRIM11Q96F44 468 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 RUNDC3BQ96NL0 473 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 FAM118BQ9BPY3 351 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 NRBP2Q9NSY0 501 aa16.45■□□□□ 0.22
UPF3B-202ENST00000345865 MTRF1LQ9UGC7 380 aaKnown RBP16.45■□□□□ 0.22
UPF3B-202ENST00000345865 LRRC37A2A6NM11 1700 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 PAPPA2Q9BXP8 1791 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 SRRM3A6NNA2 597 aaPredicted RBP16.44■□□□□ 0.22
UPF3B-202ENST00000345865 ZBTB42B2RXF5 422 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 THAP12O43422 761 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 RARGP13631 454 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 GBP1P32455 592 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 IFI35P80217 286 aaPredicted RBP16.44■□□□□ 0.22
UPF3B-202ENST00000345865 KLF1Q13351 362 aaPredicted RBP16.44■□□□□ 0.22
UPF3B-202ENST00000345865 HSDL1Q3SXM5 330 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 PLEKHA7Q6IQ23 1121 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 PHF13Q86YI8 300 aaPredicted RBP16.44■□□□□ 0.22
UPF3B-202ENST00000345865 UBR7Q8N806 425 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 EPS8L3Q8TE67 593 aaKnown RBP16.44■□□□□ 0.22
UPF3B-202ENST00000345865 PLVAPQ9BX97 442 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 DCLK3Q9C098 648 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 CCDC113Q9H0I3 377 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 ADAM7Q9H2U9 754 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 SOCS7O14512 581 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 IRF6O14896 467 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 RALAP11233 206 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 CHKAP35790 457 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 ZNF132P52740 706 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 R3HDM1Q15032 1099 aaKnown RBP16.44■□□□□ 0.22
UPF3B-202ENST00000345865 TRIP13Q15645 432 aaPredicted RBP16.44■□□□□ 0.22
UPF3B-202ENST00000345865 QPCTQ16769 361 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 RHBDF2Q6PJF5 856 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 GADL1Q6ZQY3 521 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 HOOK3Q86VS8 718 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 BRSK2Q8IWQ3 736 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 LRRC71Q8N4P6 559 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 ZNF606Q8WXB4 792 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 SEPT1Q8WYJ6 367 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 PGM2Q96G03 612 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 FGD4Q96M96 766 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 PAGR1Q9BTK6 254 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 MTMR12Q9C0I1 747 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 AZI2Q9H6S1 392 aa16.44■□□□□ 0.22
UPF3B-202ENST00000345865 MGAMO43451 1857 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 GMNCA6NCL1 334 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 ADM5C9JUS6 153 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 ABLIM1O14639 778 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 CNMDO75829 334 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 PGK2P07205 417 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 PAEPP09466 180 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 SRGAP2CP0DJJ0 459 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 TCF4P15884 667 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 TBXAS1P24557 533 aaPredicted RBP16.43■□□□□ 0.22
UPF3B-202ENST00000345865 RPL7AP62424 266 aaKnown RBP16.43■□□□□ 0.22
UPF3B-202ENST00000345865 BYSLQ13895 437 aaKnown RBP16.43■□□□□ 0.22
UPF3B-202ENST00000345865 NEDD9Q14511 834 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 METTL7BQ6UX53 244 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 CCDC25Q86WR0 208 aa16.43■□□□□ 0.22
UPF3B-202ENST00000345865 DDX23Q9BUQ8 820 aaKnown RBP16.43■□□□□ 0.22
UPF3B-202ENST00000345865 ASS1P00966 412 aaKnown RBP16.42■□□□□ 0.22
UPF3B-202ENST00000345865 SLCO1A2P46721 670 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 MYL6P60660 151 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 ATP13A4Q4VNC1 1196 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 TMEM63BQ5T3F8 832 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 ZPBP2Q6X784 338 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 TRIM72Q6ZMU5 477 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 B4GALNT4Q76KP1 1039 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 ZNF668Q96K58 619 aaPredicted RBP16.42■□□□□ 0.22
UPF3B-202ENST00000345865 ACO2Q99798 780 aaKnown RBP16.42■□□□□ 0.22
UPF3B-202ENST00000345865 TSPYL1Q9H0U9 437 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 MCM3APO60318 1980 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 TLR3O15455 904 aaKnown RBP16.42■□□□□ 0.22
UPF3B-202ENST00000345865 TOM1L1O75674 476 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms