RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 C6orf163Q5TEZ5 329 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 MTMR12Q9C0I1 747 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 CYP3A43Q9HB55 503 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 CNTNAP1P78357 1384 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 SLC2A3P11169 496 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 VPS41P49754 854 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 TPI1P60174 286 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 YWHAHQ04917 246 aaPredicted RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 CYP24A1Q07973 514 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 CCDC15Q0P6D6 951 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 NFE2Q16621 373 aaPredicted RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 ATP6V0D2Q8N8Y2 350 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 TRIM56Q9BRZ2 755 aaKnown RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 ASB7Q9H672 318 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 FAM49BQ9NUQ9 324 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 KLHL8Q9P2G9 620 aaPredicted RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 PTPN22Q9Y2R2 807 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 MARF1Q9Y4F3 1742 aaKnown RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 CTNNB1P35222 781 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 SLC1A1P43005 524 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 ERCC6LQ2NKX8 1250 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 CDKL3Q8IVW4 592 aaPredicted RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 PURBQ96QR8 312 aaKnown RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 GAS2L1Q99501 681 aaPredicted RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 FSD1LQ9BXM9 530 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 STK39Q9UEW8 545 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 DYNC1I1O14576 645 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 KRT3P12035 628 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 FGFR4P22455 802 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 RGS7P49802 495 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 KLC2Q9H0B6 622 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 SIK2Q9H0K1 926 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 FAM114A2Q9NRY5 505 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 THG1LQ9NWX6 298 aaKnown RBP10.75□□□□□ -0.69
USP54-201ENST00000339859 IPPQ9Y573 584 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 TLL1O43897 1013 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 KRT15P19012 456 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 IGFBP4P22692 258 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 SNX1Q13596 522 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 KRT33BQ14525 404 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 PTPN21Q16825 1174 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 PPM1LQ5SGD2 360 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 UBE2Q2Q8WVN8 375 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 DHX35Q9H5Z1 703 aaKnown RBP10.75□□□□□ -0.69
USP54-201ENST00000339859 TRPM5Q9NZQ8 1165 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 HDAC6Q9UBN7 1215 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 KCNA3P22001 575 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 SHROOM1Q2M3G4 852 aaPredicted RBP10.75□□□□□ -0.69
USP54-201ENST00000339859 FBXO47Q5MNV8 452 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 TAB3Q8N5C8 712 aaPredicted RBP10.75□□□□□ -0.69
USP54-201ENST00000339859 ACRBPQ8NEB7 543 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 PARD3BQ8TEW8 1205 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 PPP1R13BQ96KQ4 1090 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 PDGFCQ9NRA1 345 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 MRPL17Q9NRX2 175 aaKnown RBP10.75□□□□□ -0.69
USP54-201ENST00000339859 UXTQ9UBK9 157 aaPredicted RBP10.75□□□□□ -0.69
USP54-201ENST00000339859 NAGPAQ9UK23 515 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 PCDHB5Q9Y5E4 795 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.75□□□□□ -0.69
USP54-201ENST00000339859 FTCDO95954 541 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 FGBP02675 491 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 WEE2P0C1S8 567 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 VDRP11473 427 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 ICAM3P32942 547 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 PPM1AP35813 382 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 YWHAGP61981 247 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP54-201ENST00000339859 DRP2Q13474 957 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 ZNF235Q14590 738 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 SPON2Q9BUD6 331 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 PCDHB2Q9Y5E7 798 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 ABCA3Q99758 1704 aa10.75□□□□□ -0.69
USP54-201ENST00000339859 PPP1R12AO14974 1030 aaPredicted RBP10.74□□□□□ -0.69
USP54-201ENST00000339859 AP1G2O75843 785 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 HMBSP08397 361 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 MBL2P11226 248 aaPredicted RBP10.74□□□□□ -0.69
USP54-201ENST00000339859 DNAJB2P25686 324 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 BASP1P80723 227 aaKnown RBP10.74□□□□□ -0.69
USP54-201ENST00000339859 MAP7D1Q3KQU3 841 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 SEZ6Q53EL9 994 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 FYB2Q5VWT5 728 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 USP49Q70CQ1 688 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 FBXO32Q969P5 355 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 MTMR9Q96QG7 549 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 WNT8AQ9H1J5 351 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 CATSPERBQ9H7T0 1116 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 KBTBD4Q9NVX7 518 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 PODXLO00592 558 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 APOL1O14791 398 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 POLR3GO15318 223 aaPredicted RBP10.74□□□□□ -0.69
USP54-201ENST00000339859 SRGAP2O75044 1071 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 FBXO21O94952 628 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 CXCL8P10145 99 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 CCL5P13501 91 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 SLC11A2P49281 568 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 PREPLQ4J6C6 727 aaPredicted RBP10.74□□□□□ -0.69
USP54-201ENST00000339859 RHOT1Q8IXI2 618 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 PGBD3Q8N328 593 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 GPR20Q99678 358 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 DFFAO00273 331 aa10.74□□□□□ -0.69
USP54-201ENST00000339859 ASGR1P07306 291 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms