RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GALCP54803 685 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 PTPN11Q06124 597 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-202ENST00000338045 MGAT3Q09327 533 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 ZNF699Q32M78 642 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 UBXN11Q5T124 520 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 PAPD7Q5XG87 772 aaKnown RBP16.59■□□□□ 0.25
LIMS1-202ENST00000338045 ZNF677Q86XU0 584 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 SNX27Q96L92 541 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 ALS2CR12Q96Q35 445 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 PCDHB18PQ96TA0 734 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 TSEN34Q9BSV6 310 aaKnown RBP16.59■□□□□ 0.25
LIMS1-202ENST00000338045 SENP6Q9GZR1 1112 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-202ENST00000338045 HMX1Q9NP08 348 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-202ENST00000338045 SNTG2Q9NY99 539 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 TAS2R14Q9NYV8 317 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 PCDHGC5Q9Y5F6 944 aa16.59■□□□□ 0.25
LIMS1-202ENST00000338045 RALGAPA2Q2PPJ7 1873 aa16.58■□□□□ 0.25
LIMS1-202ENST00000338045 SLU7O95391 586 aaKnown RBP16.58■□□□□ 0.24
LIMS1-202ENST00000338045 MYCNP04198 464 aaPredicted RBP16.58■□□□□ 0.24
LIMS1-202ENST00000338045 MMEP08473 750 aa16.58■□□□□ 0.24
LIMS1-202ENST00000338045 ZNF132P52740 706 aa16.58■□□□□ 0.24
LIMS1-202ENST00000338045 ITGA7Q13683 1181 aa16.58■□□□□ 0.24
LIMS1-202ENST00000338045 ALKAL1Q6UXT8 129 aa16.58■□□□□ 0.24
LIMS1-202ENST00000338045 DNAAF5Q86Y56 855 aa16.58■□□□□ 0.24
LIMS1-202ENST00000338045 CDC23Q9UJX2 597 aa16.58■□□□□ 0.24
LIMS1-202ENST00000338045 NOC2LQ9Y3T9 749 aaKnown RBP16.58■□□□□ 0.24
LIMS1-202ENST00000338045 JRKLQ9Y4A0 524 aa16.58■□□□□ 0.24
LIMS1-202ENST00000338045 ANKRD62A6NC57 917 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 BUB1O43683 1085 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 STAU1O95793 577 aaKnown RBP16.57■□□□□ 0.24
LIMS1-202ENST00000338045 CHRNA1P02708 482 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 ATICP31939 592 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 ASPAP45381 313 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 ZBTB6Q15916 424 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 PTGISQ16647 500 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 TAF3Q5VWG9 929 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 TRIM6Q9C030 488 aaPredicted RBP16.57■□□□□ 0.24
LIMS1-202ENST00000338045 NXF3Q9H4D5 531 aaKnown RBP16.57■□□□□ 0.24
LIMS1-202ENST00000338045 SEPT11Q9NVA2 429 aaKnown RBP16.57■□□□□ 0.24
LIMS1-202ENST00000338045 ITGA11Q9UKX5 1188 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 PCDHB4Q9Y5E5 795 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 PTCH2Q9Y6C5 1203 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 NCANO14594 1321 aa16.57■□□□□ 0.24
LIMS1-202ENST00000338045 RTN2O75298 545 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 ATP1A1P05023 1023 aaKnown RBP16.56■□□□□ 0.24
LIMS1-202ENST00000338045 ITGB3P05106 788 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 YARSP54577 528 aaKnown RBP16.56■□□□□ 0.24
LIMS1-202ENST00000338045 TMEM270Q6UE05 265 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 KIF12Q96FN5 646 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 BCO2Q9BYV7 579 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 CNTN3Q9P232 1028 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 TMCO5BA8MYB1 307 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 ENC1O14682 589 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 RECQL4O94761 1208 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 KRT19P08727 400 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 PTK7Q13308 1070 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 XKR4Q5GH76 650 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 RBBP8NLQ8NC74 664 aaPredicted RBP16.56■□□□□ 0.24
LIMS1-202ENST00000338045 RFFLQ8WZ73 363 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 ZMAT2Q96NC0 199 aaKnown RBP16.56■□□□□ 0.24
LIMS1-202ENST00000338045 TSPAN18Q96SJ8 248 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 DPP3Q9NY33 737 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 HES2Q9Y543 173 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 DNAH12Q6ZR08 3092 aa16.56■□□□□ 0.24
LIMS1-202ENST00000338045 FTLP02792 175 aaPredicted RBP16.55■□□□□ 0.24
LIMS1-202ENST00000338045 TCEAL1Q15170 157 aa16.55■□□□□ 0.24
LIMS1-202ENST00000338045 IFI16Q16666 785 aaKnown RBP16.55■□□□□ 0.24
LIMS1-202ENST00000338045 ZNF667Q5HYK9 610 aa16.55■□□□□ 0.24
LIMS1-202ENST00000338045 CTNNBL1Q8WYA6 563 aaPredicted RBP16.55■□□□□ 0.24
LIMS1-202ENST00000338045 GLT1D1Q96MS3 346 aa16.55■□□□□ 0.24
LIMS1-202ENST00000338045 CXCL16Q9H2A7 254 aa16.55■□□□□ 0.24
LIMS1-202ENST00000338045 CISHQ9NSE2 258 aa16.55■□□□□ 0.24
LIMS1-202ENST00000338045 TRIM17Q9Y577 477 aa16.55■□□□□ 0.24
LIMS1-202ENST00000338045 MYH10P35580 1976 aa16.55■□□□□ 0.24
LIMS1-202ENST00000338045 GRID2IPA4D2P6 1211 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 RPS6KA5O75582 802 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 PALMO75781 387 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 CTSHP09668 335 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 CHRM1P11229 460 aaPredicted RBP16.54■□□□□ 0.24
LIMS1-202ENST00000338045 POLR2BP30876 1174 aaKnown RBP16.54■□□□□ 0.24
LIMS1-202ENST00000338045 NAP1L1P55209 391 aaKnown RBP16.54■□□□□ 0.24
LIMS1-202ENST00000338045 RBP5P82980 135 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 TRIM71Q2Q1W2 868 aaKnown RBP16.54■□□□□ 0.24
LIMS1-202ENST00000338045 TMEM130Q8N3G9 435 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 SLC43A3Q8NBI5 491 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 SMG8Q8ND04 991 aaKnown RBP16.54■□□□□ 0.24
LIMS1-202ENST00000338045 THAP2Q9H0W7 228 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 CHST12Q9NRB3 414 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 ST3GAL5Q9UNP4 418 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 IPPQ9Y573 584 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 SAR1BQ9Y6B6 198 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 FRMPD3Q5JV73 1810 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 CLSTN1O94985 981 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 UNGP13051 313 aaPredicted RBP16.54■□□□□ 0.24
LIMS1-202ENST00000338045 KCNE1P15382 129 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 PRLRP16471 622 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 GNA15P30679 374 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 GUCY2FP51841 1108 aa16.54■□□□□ 0.24
LIMS1-202ENST00000338045 YWHAEP62258 255 aaKnown RBP16.54■□□□□ 0.24
LIMS1-202ENST00000338045 CLEC16AQ2KHT3 1053 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms