RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 DUX4L4P0CJ87 422 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 DUX4L5P0CJ88 424 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 DUX4L6P0CJ89 424 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 DUX4L7P0CJ90 424 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 SCTRP47872 440 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ANO4Q32M45 955 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ABTB1Q969K4 478 aaPredicted RBP10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 DUX4Q9UBX2 424 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 SYNPO2Q9UMS6 1093 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 HLFQ16534 295 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 CRELD2Q6UXH1 353 aaPredicted RBP10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 MYH7BA7E2Y1 1941 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L15C9J2P7 530 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L13C9JLJ4 530 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L11C9JVI0 530 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L18D6R9N7 530 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L22D6RA61 530 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L17D6RBQ6 530 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L19D6RCP7 530 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L20D6RJB6 530 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 GH2P01242 217 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 SPRP35270 261 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L24Q0WX57 530 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 PDK1Q15118 436 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 CENPPQ6IPU0 288 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L6PQ6QN14 398 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 GADL1Q6ZQY3 521 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 REEP2Q9BRK0 252 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 SATB2Q9UPW6 733 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 STX3Q13277 289 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 PPP6R3Q5H9R7 873 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 PPHLN1Q8NEY8 458 aaKnown RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 DPF2Q92785 391 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 ERP27Q96DN0 273 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 OTUB1Q96FW1 271 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 NALCNQ8IZF0 1738 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 EXTL3O43909 919 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 E2F6O75461 281 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 RFX5P48382 616 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 CDH6P55285 790 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 FAM84BQ96KN1 310 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 CRAMP1Q96RY5 1269 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 SMARCAL1Q9NZC9 954 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 DCDC2Q9UHG0 476 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 BTNL10A8MVZ5 291 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 SLCO1B7G3V0H7 640 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 GDF11O95390 407 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 POLBP06746 335 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 FCGR1AP12314 374 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 HNRNPH1P31943 449 aaKnown RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 CASP2P42575 452 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 COPAP53621 1224 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 SKOR1P84550 965 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 BARGINQ6ZT62 677 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 VCPIP1Q96JH7 1222 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 CDYLQ9Y232 598 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 CD302Q8IX05 232 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 SKA2Q8WVK7 121 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 GID8Q9NWU2 228 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 NQO1P15559 274 aaKnown RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 TSPY1Q01534 308 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 STK4Q13043 487 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 FAM102AQ5T9C2 384 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 DDX50Q9BQ39 737 aaKnown RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 ADA2Q9NZK5 511 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 NFAT5O94916 1531 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 FKBP6O75344 327 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 PTENP60484 403 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 PPP4CP60510 307 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 ADCY1Q08828 1119 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 PTPN21Q16825 1174 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 DPP9Q86TI2 863 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 LONP2Q86WA8 852 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 MREGQ8N565 214 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 ZFRQ96KR1 1074 aaKnown RBP10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 PNKPQ96T60 521 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 ACAD9Q9H845 621 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 SHOC2Q9UQ13 582 aa10.8□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF185O15231 689 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 MAGEA4P43358 317 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 XKR3Q5GH77 459 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 TFDP3Q5H9I0 405 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 TTI2Q6NXR4 508 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 ABI1Q8IZP0 508 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 EXD1Q8NHP7 514 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 OLFML3Q9NRN5 406 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 KRT82Q9NSB4 513 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 RPLP2P05387 115 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 PYGLP06737 847 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 PRKAA2P54646 552 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 MTA1Q13330 715 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 KIF22Q14807 665 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 MFN1Q8IWA4 741 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 FAM213AQ9BRX8 229 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 TRIM54Q9BYV2 358 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 YIPF3Q9GZM5 350 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 CCDC78A2IDD5 438 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 MYMKA6NI61 221 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 MAGEB2O15479 319 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 PRDX5P30044 214 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms