RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 IFNL3Q8IZI9 196 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 MIEF2Q96C03 454 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 RNPC3Q96LT9 517 aaKnown RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 FOPNLQ96NB1 174 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 CYLDQ9NQC7 956 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 SASH1O94885 1247 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 BNC1Q01954 994 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 ORC2Q13416 577 aaPredicted RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 CHRNA2Q15822 529 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 MDH1BQ5I0G3 518 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 MEI1Q5TIA1 1274 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 LRRC31Q6UY01 552 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 SVOPQ8N4V2 548 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 CCDC33Q8N5R6 958 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 NFATC2IPQ8NCF5 419 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 MAGEB18Q96M61 343 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 RBM15Q96T37 977 aaKnown RBP eCLIP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 SNX12Q9UMY4 172 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 R3HDM2Q9Y2K5 976 aaKnown RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 CASZ1Q86V15 1759 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 CROCC2H7BZ55 1655 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 ARID1AO14497 2285 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 CNOT3O75175 753 aaKnown RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 CD58P19256 250 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 FLT3P36888 993 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 RGS21Q2M5E4 152 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 USP39Q53GS9 565 aaKnown RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 FAM47CQ5HY64 1035 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 C1orf228Q6PIY5 440 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 NSUN7Q8NE18 718 aaKnown RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 OR6P1Q8NGX9 317 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 PPP2R3CQ969Q6 453 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 WDR24Q96S15 920 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 FBXO28Q9NVF7 368 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 TPD52L2O43399 206 aaKnown RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 CDC40O60508 579 aaKnown RBP eCLIP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 BCAR1P56945 870 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 ZNF699Q32M78 642 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 ENOSF1Q7L5Y1 443 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 ABI1Q8IZP0 508 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 MTA3Q9BTC8 594 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 ANTXR1Q9H6X2 564 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 MAP2P11137 1827 aaKnown RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 EVPLQ92817 2033 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 TEX28O15482 410 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 IDH3BO43837 385 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 ZCCHC18P0CG32 403 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 PPIDQ08752 370 aaKnown RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 PTK7Q13308 1070 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 KIAA0408Q6ZU52 694 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 UNC13DQ70J99 1090 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 RNF135Q8IUD6 432 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 PPP1R36Q96LQ0 422 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 PACSIN1Q9BY11 444 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 KIAA1586Q9HCI6 787 aa6.46□□□□□ -1.38
CSMD1-201ENST00000335551 SARS2Q9NP81 518 aaKnown RBP6.46□□□□□ -1.38
CSMD1-201ENST00000335551 SYNDIG1LA6NDD5 238 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 ATP1A3P13637 1013 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 WARSP23381 471 aaKnown RBP6.45□□□□□ -1.38
CSMD1-201ENST00000335551 CCND2P30279 289 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 GPR162Q16538 588 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 DDR2Q16832 855 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 CYFIP1Q7L576 1253 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 RNFT2Q96EX2 444 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 AVENQ9NQS1 362 aaPredicted RBP6.45□□□□□ -1.38
CSMD1-201ENST00000335551 VPS9D1Q9Y2B5 631 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 ADD1P35611 737 aaKnown RBP6.45□□□□□ -1.38
CSMD1-201ENST00000335551 NUDT2P50583 147 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 GCKRQ14397 625 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 TIMM50Q3ZCQ8 353 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 FAM47AQ5JRC9 791 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 DPY19L2Q6NUT2 758 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 ZFP1Q6P2D0 407 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 EDC4Q6P2E9 1401 aaKnown RBP6.45□□□□□ -1.38
CSMD1-201ENST00000335551 BNC2Q6ZN30 1099 aaPredicted RBP6.45□□□□□ -1.38
CSMD1-201ENST00000335551 ASAP3Q8TDY4 903 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 MYLK2Q9H1R3 596 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 EMC3Q9P0I2 261 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 BTBD3Q9Y2F9 522 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 CCDC182A6NF36 153 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 INO80B-WBP1J3KQ70 363 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 PHKA1P46020 1223 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 IRAK1P51617 712 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 PTH1RQ03431 593 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 CHRNB3Q05901 458 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 SNX17Q15036 470 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 MZT2BQ6NZ67 158 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 CDC73Q6P1J9 531 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 TTC23LQ6PF05 361 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 FAM81AQ8TBF8 368 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 AGR3Q8TD06 166 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 HNRNPLLQ8WVV9 542 aaKnown RBP6.45□□□□□ -1.38
CSMD1-201ENST00000335551 INO80BQ9C086 356 aaPredicted RBP6.45□□□□□ -1.38
CSMD1-201ENST00000335551 KLHL41O60662 606 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 ATP12AP54707 1039 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 ZYXQ15942 572 aaKnown RBP6.45□□□□□ -1.38
CSMD1-201ENST00000335551 TMEM63BQ5T3F8 832 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 PRMT9Q6P2P2 845 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 VTA1Q9NP79 307 aa6.45□□□□□ -1.38
CSMD1-201ENST00000335551 RPRD1BQ9NQG5 326 aaKnown RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms