RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 MMS22LQ6ZRQ5 1243 aa15.85■□□□□ 0.13
CLCNKA-201ENST00000331433 FBXO16Q8IX29 292 aaPredicted RBP15.85■□□□□ 0.13
CLCNKA-201ENST00000331433 TRAPPC12Q8WVT3 735 aa15.85■□□□□ 0.13
CLCNKA-201ENST00000331433 ATG4AQ8WYN0 398 aa15.85■□□□□ 0.13
CLCNKA-201ENST00000331433 ZBTB10Q96DT7 871 aa15.85■□□□□ 0.13
CLCNKA-201ENST00000331433 TRIM11Q96F44 468 aa15.85■□□□□ 0.13
CLCNKA-201ENST00000331433 MRPL4Q9BYD3 311 aaKnown RBP15.85■□□□□ 0.13
CLCNKA-201ENST00000331433 CCDC113Q9H0I3 377 aa15.85■□□□□ 0.13
CLCNKA-201ENST00000331433 NOP56O00567 594 aaKnown RBP15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 FSCN2O14926 492 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 TOM1L1O75674 476 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 TBXAS1P24557 533 aaPredicted RBP15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 SGO2Q562F6 1265 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 WDR78Q5VTH9 848 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 EFCAB13Q8IY85 973 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 COPS5Q92905 334 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 NOVA2Q9UNW9 492 aaKnown RBP15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 SBF1O95248 1867 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 MYO1CO00159 1063 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 PRKCBP05771 671 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 CD58P19256 250 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 MDH1P40925 334 aaKnown RBP15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 FNTAP49354 379 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 C12orf50Q8NA57 414 aaPredicted RBP15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 BBXQ8WY36 941 aaPredicted RBP15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 DDX27Q96GQ7 796 aaKnown RBP15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 LRRC19Q9H756 370 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 CHST7Q9NS84 486 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 RBPJLQ9UBG7 517 aa15.84■□□□□ 0.13
CLCNKA-201ENST00000331433 A6NNZ2 444 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 TULP2O00295 520 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 TRIM66O15016 1216 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 ECEL1O95672 775 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 EFNA5P52803 228 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 MYL6P60660 151 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 MAMLD1Q13495 774 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 TTLL12Q14166 644 aaPredicted RBP15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 TUBB8Q3ZCM7 444 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 ODF2Q5BJF6 829 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 CELF3Q5SZQ8 465 aaKnown RBP15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 LIN9Q5TKA1 542 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 IER5Q5VY09 327 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 CDR2LQ86X02 465 aaPredicted RBP15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 ERO1BQ86YB8 467 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 RHPN2Q8IUC4 686 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 RNF25Q96BH1 459 aaPredicted RBP15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 FAM167AQ96KS9 214 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 ACO2Q99798 780 aaKnown RBP15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 PLVAPQ9BX97 442 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 IMPG2Q9BZV3 1241 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 PABPC3Q9H361 631 aaKnown RBP15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 CNTN6Q9UQ52 1028 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 PASKQ96RG2 1323 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 PROSCO94903 275 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 SLC1A1P43005 524 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 MAGOHP61326 146 aaKnown RBP15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 PPP1R7Q15435 360 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 ZNF394Q53GI3 561 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 CDCA2Q69YH5 1023 aaPredicted RBP15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 SPATA33Q96N06 139 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 HEMGNQ9BXL5 484 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 SEMA4AQ9H3S1 761 aa15.83■□□□□ 0.12
CLCNKA-201ENST00000331433 NDUFAB1O14561 156 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 ASS1P00966 412 aaKnown RBP15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 FGFR4P22455 802 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 GJC1P36383 396 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 SEC24CP53992 1094 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 TAS2R40P59535 323 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 OSTNP61366 133 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 PLCB4Q15147 1175 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 MAPK6Q16659 721 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 AGBL2Q5U5Z8 902 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 TRIM72Q6ZMU5 477 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 WDR49Q8IV35 697 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 CCDC50Q8IVM0 306 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 UHMK1Q8TAS1 419 aaKnown RBP15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 ZNF606Q8WXB4 792 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 RNF181Q9P0P0 153 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 AGTPBP1Q9UPW5 1226 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 USTQ9Y2C2 406 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 R3HDM2Q9Y2K5 976 aaKnown RBP15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 ABLIM1O14639 778 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 CAND2O75155 1236 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 SLC25A27O95847 323 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 TMOD1P28289 359 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 KRT17Q04695 432 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 PTP4A2Q12974 167 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 SLC29A2Q14542 456 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 PTGISQ16647 500 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 SPDYCQ5MJ68 293 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 DENND2CQ68D51 928 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 PHF13Q86YI8 300 aaPredicted RBP15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 ZBTB8OSQ8IWT0 167 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 THNSL1Q8IYQ7 743 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 NLRP4Q96MN2 994 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 FAM118BQ9BPY3 351 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 MTRF1LQ9UGC7 380 aaKnown RBP15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 SLC12A6Q9UHW9 1150 aa15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.82■□□□□ 0.12
CLCNKA-201ENST00000331433 OGTO15294 1046 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms