RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 ZFP69BQ9UJL9 534 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 PXDNQ92626 1479 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 RAP1GAPP47736 663 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 SGSM1Q2NKQ1 1148 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 KLHL38Q2WGJ6 581 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 E4F1Q66K89 784 aaPredicted RBP10.72□□□□□ -0.69
CHD3-201ENST00000330494 WDR75Q8IWA0 830 aaKnown RBP10.72□□□□□ -0.69
CHD3-201ENST00000330494 ZNF512Q96ME7 567 aaPredicted RBP10.72□□□□□ -0.69
CHD3-201ENST00000330494 SENP7Q9BQF6 1050 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 CELF4Q9BZC1 486 aaKnown RBP10.72□□□□□ -0.69
CHD3-201ENST00000330494 MUC3BQ9H195 1237 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 PCDHB7Q9Y5E2 793 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 CETPP11597 493 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 SOX11P35716 441 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 VSNL1P62760 191 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 THEMIS2Q5TEJ8 643 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 CDKL3Q8IVW4 592 aaPredicted RBP10.72□□□□□ -0.69
CHD3-201ENST00000330494 PRMT1Q99873 361 aaKnown RBP10.72□□□□□ -0.69
CHD3-201ENST00000330494 ABI2Q9NYB9 513 aaPredicted RBP10.72□□□□□ -0.69
CHD3-201ENST00000330494 DONSONQ9NYP3 566 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 KIAA1210Q9ULL0 1709 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 ZNF286BP0CG31 522 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 TYK2P29597 1187 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 KCNJ1P48048 391 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 CLCN3P51790 818 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 VCPP55072 806 aaKnown RBP10.72□□□□□ -0.69
CHD3-201ENST00000330494 KIZQ2M2Z5 673 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 RAD9BQ6WBX8 426 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 NUDCD3Q8IVD9 361 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 OR2W6PQ8NHA6 318 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 CEP70Q8NHQ1 597 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 NUDT12Q9BQG2 462 aa10.72□□□□□ -0.69
CHD3-201ENST00000330494 PRG3Q9Y2Y8 225 aaPredicted RBP10.72□□□□□ -0.69
CHD3-201ENST00000330494 ANO9A1A5B4 782 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 NFIBO00712 420 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 TADA3O75528 432 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 RPA1P27694 616 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 PPP2R2AP63151 447 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 CCZ1BP86790 482 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 CCZ1P86791 482 aaPredicted RBP10.71□□□□□ -0.69
CHD3-201ENST00000330494 TERF2Q15554 542 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 YAF2Q8IY57 180 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 FBXO41Q8TF61 875 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 XPO7Q9UIA9 1087 aaKnown RBP10.71□□□□□ -0.69
CHD3-201ENST00000330494 ADAM21Q9UKJ8 722 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 GYPCP04921 128 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 HPDLQ96IR7 371 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 RTFDC1Q9BY42 306 aaPredicted RBP10.71□□□□□ -0.69
CHD3-201ENST00000330494 DNAJC5Q9H3Z4 198 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 SLC13A4Q9UKG4 626 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 GUCY1A3Q02108 690 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 SH2D3CQ8N5H7 860 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 EFHBQ8N7U6 833 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 PPP1R13LQ8WUF5 828 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 SH3KBP1Q96B97 665 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 EPAS1Q99814 870 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 ADA2Q9NZK5 511 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 CPA4Q9UI42 421 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 SNX12Q9UMY4 172 aa10.71□□□□□ -0.69
CHD3-201ENST00000330494 GRID2IPA4D2P6 1211 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 PPP1R3GB7ZBB8 358 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 DDNO94850 711 aaPredicted RBP10.71□□□□□ -0.7
CHD3-201ENST00000330494 ASMTLO95671 621 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 ICAM1P05362 532 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 CD44P16070 742 aaKnown RBP10.71□□□□□ -0.7
CHD3-201ENST00000330494 ACAD11Q709F0 780 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 NCOA3Q9Y6Q9 1424 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 MAP3K7O43318 606 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 TFRCP02786 760 aaKnown RBP10.71□□□□□ -0.7
CHD3-201ENST00000330494 INPP1P49441 399 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 AP3M2P53677 418 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 TROAPQ12815 778 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 RGS9BPQ6ZS82 235 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 RFWD2Q8NHY2 731 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 EHD2Q9NZN4 543 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 MID2Q9UJV3 735 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 SLC4A7Q9Y6M7 1214 aa10.71□□□□□ -0.7
CHD3-201ENST00000330494 RGL2O15211 777 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 EXTL3O43909 919 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 EXOC4Q96A65 974 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 MAGEB5Q9BZ81 275 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 TBX20Q9UMR3 447 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 L3MBTL1Q9Y468 752 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 FARP1Q9Y4F1 1045 aaPredicted RBP10.7□□□□□ -0.7
CHD3-201ENST00000330494 FRMPD1Q5SYB0 1578 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 PRPF4O43172 522 aaKnown RBP eCLIP10.7□□□□□ -0.7
CHD3-201ENST00000330494 SERPIND1P05546 499 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 COMTP21964 271 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 FXR2P51116 673 aaKnown RBP eCLIP10.7□□□□□ -0.72e-6■■■□□ 16.6
CHD3-201ENST00000330494 DEUP1Q05D60 604 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 GRB10Q13322 594 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 SCG3Q8WXD2 468 aaKnown RBP10.7□□□□□ -0.7
CHD3-201ENST00000330494 POLR3CQ9BUI4 534 aaPredicted RBP10.7□□□□□ -0.7
CHD3-201ENST00000330494 MTMR12Q9C0I1 747 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 SUN2Q9UH99 717 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 NRXN1Q9ULB1 1477 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 HSD17B4P51659 736 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 ATP11CQ8NB49 1132 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 DYRK4Q9NR20 520 aa10.7□□□□□ -0.7
CHD3-201ENST00000330494 USP20Q9Y2K6 914 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms