RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 DBF4BQ8NFT6 615 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 SEPT8Q92599 483 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 ZMAT2Q96NC0 199 aaKnown RBP10.78□□□□□ -0.68
HMGB3-201ENST00000325307 FBXL5Q9UKA1 691 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 AGAP1Q9UPQ3 857 aa10.78□□□□□ -0.68
HMGB3-201ENST00000325307 SMIM28A0A1B0GU29 152 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 ZC3H11AO75152 810 aaKnown RBP eCLIP10.77□□□□□ -0.68
HMGB3-201ENST00000325307 POLR2BP30876 1174 aaKnown RBP10.77□□□□□ -0.68
HMGB3-201ENST00000325307 MLH1P40692 756 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 DSC3Q14574 896 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 SGSM1Q2NKQ1 1148 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 C1orf53Q5VUE5 145 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 SCARA3Q6AZY7 606 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 NT5DC4Q86YG4 428 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 C18orf25Q96B23 403 aaPredicted RBP10.77□□□□□ -0.68
HMGB3-201ENST00000325307 PGBD4Q96DM1 585 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 GAD1Q99259 594 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 CHP1Q99653 195 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 OGFRQ9NZT2 677 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 CNTN3Q9P232 1028 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 NXF1Q9UBU9 619 aaKnown RBP10.77□□□□□ -0.68
HMGB3-201ENST00000325307 PLAGL2Q9UPG8 496 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 INPP5FQ9Y2H2 1132 aa10.77□□□□□ -0.68
HMGB3-201ENST00000325307 A0A0U1RQF3 1178 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 ARHGAP6O43182 974 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 XPOTO43592 962 aaKnown RBP10.77□□□□□ -0.69
HMGB3-201ENST00000325307 SKIP12755 728 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 KRT5P13647 590 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 KLHL30Q0D2K2 578 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 FTHL17Q9BXU8 183 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 TUBGCP4Q9UGJ1 667 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 UBQLN1Q9UMX0 589 aaKnown RBP10.77□□□□□ -0.69
HMGB3-201ENST00000325307 DERAQ9Y315 318 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 A0A0U1RQJ8 604 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 F8VZ95 297 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 FECHP22830 423 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 RBP5P82980 135 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 WDR59Q6PJI9 974 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 SCARA5Q6ZMJ2 495 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 ATRIPQ8WXE1 791 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 ITGA11Q9UKX5 1188 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 DAAM1Q9Y4D1 1078 aa10.77□□□□□ -0.69
HMGB3-201ENST00000325307 TULP2O00295 520 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 SOX5P35711 763 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 NAA30Q147X3 362 aaPredicted RBP10.76□□□□□ -0.69
HMGB3-201ENST00000325307 WDR72Q3MJ13 1102 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 SLC24A5Q71RS6 500 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 HELQQ8TDG4 1101 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 CCDC42Q96M95 316 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 WNT8AQ9H1J5 351 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 RSAD1Q9HA92 442 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 APOBEC3GQ9HC16 384 aaKnown RBP10.76□□□□□ -0.69
HMGB3-201ENST00000325307 SIX4Q9UIU6 781 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 MYO6Q9UM54 1294 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 NUB1Q9Y5A7 615 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 PAXBP1Q9Y5B6 917 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 CITO14578 2027 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 ARL5CA6NH57 179 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 FOXN3O00409 490 aaPredicted RBP10.76□□□□□ -0.69
HMGB3-201ENST00000325307 ASS1P00966 412 aaKnown RBP10.76□□□□□ -0.69
HMGB3-201ENST00000325307 PLEKP08567 350 aaPredicted RBP10.76□□□□□ -0.69
HMGB3-201ENST00000325307 ZNF667Q5HYK9 610 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 ALKAL1Q6UXT8 129 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 ECHDC2Q86YB7 292 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 KREMEN1Q96MU8 473 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.76□□□□□ -0.69
HMGB3-201ENST00000325307 NHEJ1Q9H9Q4 299 aaPredicted RBP10.76□□□□□ -0.69
HMGB3-201ENST00000325307 RGS18Q9NS28 235 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 TBX21Q9UL17 535 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 GIT1Q9Y2X7 761 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 ZNF623O75123 536 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 IPO7O95373 1038 aaKnown RBP10.76□□□□□ -0.69
HMGB3-201ENST00000325307 CCDC172P0C7W6 258 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 SCNN1GP51170 649 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 JAM2P57087 298 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 GCNT1Q02742 428 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 MYO1EQ12965 1108 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 MEA1Q16626 185 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 PLEKHG4Q58EX7 1191 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 RAD9BQ6WBX8 426 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 AGMOQ6ZNB7 445 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 PDCL2Q8N4E4 241 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 SYN2Q92777 582 aaPredicted RBP10.76□□□□□ -0.69
HMGB3-201ENST00000325307 HPDLQ96IR7 371 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 FAM81BQ96LP2 452 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 TRAIPQ9BWF2 469 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 NIF3L1Q9GZT8 377 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 PPP2R2CQ9Y2T4 447 aa10.76□□□□□ -0.69
HMGB3-201ENST00000325307 AKR1B10O60218 316 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 EVI5O60447 810 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 PARNO95453 639 aaKnown RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 SERPING1P05155 500 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 KCNE1P15382 129 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 RAG1P15918 1043 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 FERP16591 822 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 CAPN2P17655 700 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 TBXAS1P24557 533 aaPredicted RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 EIF4A3P38919 411 aaKnown RBP10.75□□□□□ -0.69
HMGB3-201ENST00000325307 CUL2Q13617 745 aa10.75□□□□□ -0.69
HMGB3-201ENST00000325307 ENOSF1Q7L5Y1 443 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms