RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 BLOC1S4Q9NUP1 217 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 VPS54Q9P1Q0 977 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 KLHL14Q9P2G3 628 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ZNF212Q9UDV6 495 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ZNHIT2Q9UHR6 403 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 PFASO15067 1338 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 A0A088AWK7 358 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 CHRNB1P11230 501 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 CYP7A1P22680 504 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 SERPINB6P35237 376 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ERVK-9P63128 1117 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 PRKG1Q13976 671 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 SEPT6Q14141 434 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 TGFBIQ15582 683 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 SIGIRRQ6IA17 410 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 RBM44Q6ZP01 1051 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 TOM1L2Q6ZVM7 507 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 INTS8Q75QN2 995 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 VSIG1Q86XK7 387 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 NELFCDQ8IXH7 590 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 RAD54LQ92698 747 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 FAM84BQ96KN1 310 aaPredicted RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 NEURL2Q9BR09 285 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 KLHL4Q9C0H6 718 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 METTL14Q9HCE5 456 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 PRDM11Q9NQV5 511 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 COMMD8Q9NX08 183 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ATF5Q9Y2D1 282 aaPredicted RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 COQ6Q9Y2Z9 468 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 TLL2Q9Y6L7 1015 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 TMEM114B3SHH9 223 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 TCP11X1B4DZS4 312 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 NCK2O43639 380 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 DKC1O60832 514 aaKnown RBP eCLIP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 RNASEH1O60930 286 aaKnown RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 TBX10O75333 385 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 KRT36O76013 467 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 MOCS3O95396 460 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 EIF2S1P05198 315 aaKnown RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 TARSP26639 723 aaKnown RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 MARK3P27448 753 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 BCAP31P51572 246 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 HSD17B4P51659 736 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 SLC18A1P54219 525 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 MGAT5Q09328 741 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 NONOQ15233 471 aaKnown RBP eCLIP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 TRIM71Q2Q1W2 868 aaKnown RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 PCNX4Q63HM2 1172 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 KLHDC10Q6PID8 442 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 C4orf50Q6ZRC1 276 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 FASTKD5Q7L8L6 764 aaKnown RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 SFR1Q86XK3 245 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 RELL1Q8IUW5 271 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 OLIG1Q8TAK6 271 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 RIN3Q8TB24 985 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 PGM2Q96G03 612 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 PLVAPQ9BX97 442 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 VPS16Q9H269 839 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 SEMA6BQ9H3T3 888 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 MLXIPQ9HAP2 919 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 TAB2Q9NYJ8 693 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 KCND2Q9NZV8 630 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 STX18Q9P2W9 335 aaKnown RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 LRWD1Q9UFC0 647 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 HAO1Q9UJM8 370 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 ZBTB1Q9Y2K1 713 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 TELO2Q9Y4R8 837 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 ANKRD31Q8N7Z5 1873 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 FRMPD4Q14CM0 1322 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 KMOO15229 486 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 PSMG1O95456 288 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 CYP1A2P05177 515 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 PIM1P11309 404 aaPredicted RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 IL1R1P14778 569 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 RASSF2P50749 326 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 TNNC1P63316 161 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 DSG1Q02413 1049 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 GRB10Q13322 594 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 CAVIN4Q5BKX8 364 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 ACAD11Q709F0 780 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 TMC3Q7Z5M5 1100 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 NEK8Q86SG6 692 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 DDX42Q86XP3 938 aaKnown RBP eCLIP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 GRAMD1CQ8IYS0 662 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 SYCE1Q8N0S2 351 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 CSGALNACT2Q8N6G5 542 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 C12orf50Q8NA57 414 aaPredicted RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 USP38Q8NB14 1042 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 SLC7A6OSQ96CW6 309 aaPredicted RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 MYLK2Q9H1R3 596 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 C6orf50Q9HD87 102 aa7.03□□□□□ -1.28
ZNF540-201ENST00000316433 V9GY48 417 aaPredicted RBP7.03□□□□□ -1.28
ZNF540-201ENST00000316433 FAM187AA6NFU0 413 aa7.02□□□□□ -1.29
ZNF540-201ENST00000316433 CCDC160A6NGH7 325 aa7.02□□□□□ -1.29
ZNF540-201ENST00000316433 EIF3DO15371 548 aaKnown RBP eCLIP7.02□□□□□ -1.29
ZNF540-201ENST00000316433 CLASP2O75122 1294 aaKnown RBP7.02□□□□□ -1.29
ZNF540-201ENST00000316433 CNOT3O75175 753 aaKnown RBP7.02□□□□□ -1.29
ZNF540-201ENST00000316433 NOL4O94818 638 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms