RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 EPS8Q12929 822 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 DLG2Q15700 870 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 C20orf194Q5TEA3 1177 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 BNC2Q6ZN30 1099 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 LRRC8AQ8IWT6 810 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 CCDC127Q96BQ5 260 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 TMA16Q96EY4 203 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 SGIP1Q9BQI5 828 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 VPS25Q9BRG1 176 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 HGH1Q9BTY7 390 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 PRKD2Q9BZL6 878 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 NHEJ1Q9H9Q4 299 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 PRDM4Q9UKN5 801 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 SAR1BQ9Y6B6 198 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 CIB4A0PJX0 185 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 ATP9BO43861 1147 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 PRH1P02810 166 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 GNAO1P09471 354 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 RFX3P48380 749 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 BCAR1P56945 870 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF234Q14588 700 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 NCF4Q15080 339 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 PKN1Q16512 942 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 IFIT1BQ5T764 474 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 PDZD4Q76G19 769 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 CCDC24Q8N4L8 307 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 GAREM1Q9H706 876 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 FARSBQ9NSD9 589 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 TRMT6Q9UJA5 497 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 PCDHGA4Q9Y5G9 962 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 USP47Q96K76 1375 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 UBE2QL1A1L167 161 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 MAZP56270 477 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 ILF3Q12906 894 aaKnown RBP eCLIP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 C15orf59Q2T9L4 293 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 BLOC1S5Q8TDH9 187 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 RRNAD1Q96FB5 475 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 ATXN3LQ9H3M9 355 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 TOR4AQ9NXH8 423 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 E7ESA3 106 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 USP1O94782 785 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 ZSCAN5DPP0CG00 497 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 TRHP20396 242 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 ASMTP46597 345 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 NAPAP54920 295 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 LLGL1Q15334 1064 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 TSPAN14Q8NG11 270 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 TCTEX1D2Q8WW35 142 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 EPB41L4AQ9HCS5 686 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 PSD3Q9NYI0 1048 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF230Q9UIE0 474 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 GGT7Q9UJ14 662 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 PCDHGB4Q9UN71 923 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 TFECO14948 347 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 CASP1P29466 404 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 ADSLP30566 484 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 PPP3CCP48454 512 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 AFF1P51825 1210 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 MFAP3P55082 362 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 BPIFB4P59827 614 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 RGS1Q08116 209 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 TAB1Q15750 504 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 LYRM7Q5U5X0 104 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 FAM43BQ6ZT52 329 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 AFG1LQ8WV93 481 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 MTMR8Q96EF0 704 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 HES6Q96HZ4 224 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 BRIP1Q9BX63 1249 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 ATP8A2Q9NTI2 1148 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 GINM1Q9NU53 330 aa7.99□□□□□ -1.13
LIMCH1-201ENST00000313860 VNN2O95498 520 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PRG2P13727 222 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ERCC2P18074 760 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ATF6P18850 670 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ATP5F1P24539 256 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 S100GP29377 79 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ALDH3A2P51648 485 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 RAB25P57735 213 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 RGS8P57771 180 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ITGADQ13349 1161 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PTPN21Q16825 1174 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CAVIN4Q5BKX8 364 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 SAPCD2Q86UD0 394 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CCNYL1Q8N7R7 359 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 TRPV3Q8NET8 790 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PJA1Q8NG27 643 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 TRIM43Q96BQ3 446 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 INTS4Q96HW7 963 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 S100A13Q99584 98 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 LZTS2Q9BRK4 669 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 TIMM29Q9BSF4 260 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF180Q9UJW8 692 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 DNAJC12Q9UKB3 198 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 MAGED1Q9Y5V3 778 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PASKQ96RG2 1323 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 TVP23AA6NH52 213 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 NPIPA2E9PIF3 369 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 NPIPA5E9PKD4 350 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 NPIPA3F8WFD2 350 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PLOD3O60568 738 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms