RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 PKP3Q9Y446 797 aa16.21■□□□□ 0.19
HCFC1-201ENST00000310441 DRAP1Q14919 205 aaPredicted RBP16.21■□□□□ 0.18
HCFC1-201ENST00000310441 ANKRD40Q6AI12 368 aa16.21■□□□□ 0.18
HCFC1-201ENST00000310441 HEMGNQ9BXL5 484 aa16.21■□□□□ 0.18
HCFC1-201ENST00000310441 OSBPL8Q9BZF1 889 aa16.21■□□□□ 0.18
HCFC1-201ENST00000310441 CTNNAL1Q9UBT7 734 aa16.21■□□□□ 0.18
HCFC1-201ENST00000310441 SYNDIG1LA6NDD5 238 aa16.21■□□□□ 0.18
HCFC1-201ENST00000310441 KCNA6P17658 529 aa16.21■□□□□ 0.18
HCFC1-201ENST00000310441 MICU2Q8IYU8 434 aa16.21■□□□□ 0.18
HCFC1-201ENST00000310441 DLGAP3O95886 979 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 CNTN1Q12860 1018 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 ARHGEF7Q14155 803 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 PFKFB3Q16875 520 aaPredicted RBP16.2■□□□□ 0.18
HCFC1-201ENST00000310441 MTERF3Q96E29 417 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 CATSPERBQ9H7T0 1116 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 GDAQ9Y2T3 454 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 UBN2Q6ZU65 1347 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 CAMSAP1Q5T5Y3 1602 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 DYRK3O43781 588 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 MAPK1P28482 360 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 CACHD1Q5VU97 1274 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 GPR141Q7Z602 305 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 GUF1Q8N442 669 aaKnown RBP16.2■□□□□ 0.18
HCFC1-201ENST00000310441 LATS2Q9NRM7 1088 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 PDZK1P1A8MUH7 402 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 MDH1P40925 334 aaKnown RBP16.2■□□□□ 0.18
HCFC1-201ENST00000310441 PPP3CCP48454 512 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 TRAPPC11Q7Z392 1133 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 ARL8AQ96BM9 186 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 THOC1Q96FV9 657 aaKnown RBP16.2■□□□□ 0.18
HCFC1-201ENST00000310441 RMND5BQ96G75 393 aaPredicted RBP16.2■□□□□ 0.18
HCFC1-201ENST00000310441 SERPINB3P29508 390 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 USP11P51784 963 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 PSMC6P62333 389 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 NFRKBQ6P4R8 1299 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 SHCBP1Q8NEM2 672 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 FAM167BQ9BTA0 163 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 PCDHB6Q9Y5E3 794 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 hCG_2014768A0A024R1R8 64 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 SMIM31A0A1B0GVY4 71 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 MYL3P08590 195 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 RESTQ13127 1097 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 STX5Q13190 355 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 FAM45AQ8TCE6 357 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 FAM49AQ9H0Q0 323 aaPredicted RBP16.2■□□□□ 0.18
HCFC1-201ENST00000310441 ADCY10Q96PN6 1610 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 EIF3HO15372 352 aaKnown RBP eCLIP16.2■□□□□ 0.182e-6■□□□□ 11.1
HCFC1-201ENST00000310441 CRKLP46109 303 aaKnown RBP16.2■□□□□ 0.18
HCFC1-201ENST00000310441 CDK8P49336 464 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 UBXN2AP68543 259 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 USP17L2Q6R6M4 530 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 DPP10Q8N608 796 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 C19orf18Q8NEA5 215 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 C20orf96Q9NUD7 363 aaPredicted RBP16.2■□□□□ 0.18
HCFC1-201ENST00000310441 GCLMP48507 274 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 PKP1Q13835 747 aa16.2■□□□□ 0.18
HCFC1-201ENST00000310441 SF3B1O75533 1304 aaKnown RBP eCLIP16.19■□□□□ 0.182e-7■■■■■ 178
HCFC1-201ENST00000310441 TRIM24O15164 1050 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 ATXN8OSP0DMR3 200 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 COA1Q9GZY4 146 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 CLEC4MQ9H2X3 399 aaPredicted RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 SLC38A7Q9NVC3 462 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 HSPBP1Q9NZL4 362 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 CENPXA8MT69 81 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 MRPS25P82663 173 aaKnown RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 STAG2Q8N3U4 1231 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 KCTD17Q8N5Z5 321 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 FRMD8P1Q9BZ68 369 aaPredicted RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 TUFT1Q9NNX1 390 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 AKT1P31749 480 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 HIST2H2ACQ16777 129 aaPredicted RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 HIST2H2AA3Q6FI13 130 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 APBB2Q92870 758 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 C18orf8Q96DM3 657 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 EDC3Q96F86 508 aaKnown RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 UBA2Q9UBT2 640 aaPredicted RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 LOC102724428A0A0B4J2F2 783 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 ADORA1P30542 326 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 SIK1P57059 783 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 CACNB1Q02641 598 aaPredicted RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 PDK1Q15118 436 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 NCKAP5LQ9HCH0 1330 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 ACADSBP45954 432 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 CTTNQ14247 550 aaKnown RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 FAM83EQ2M2I3 478 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 FAM180AQ6UWF9 173 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 APOBEC3FQ8IUX4 373 aaKnown RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 XPO7Q9UIA9 1087 aaKnown RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 MTRF1O75570 445 aaKnown RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 KCNB1Q14721 858 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 KRT77Q7Z794 578 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 PPP1R37O75864 691 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 VHLP40337 213 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 SRLQ86TD4 932 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 C11orf70Q9BRQ4 267 aa16.19■□□□□ 0.18
HCFC1-201ENST00000310441 BSDC1Q9NW68 430 aaPredicted RBP16.19■□□□□ 0.18
HCFC1-201ENST00000310441 VSNL1P62760 191 aa16.18■□□□□ 0.18
HCFC1-201ENST00000310441 RFWD2Q8NHY2 731 aa16.18■□□□□ 0.18
HCFC1-201ENST00000310441 RIN3Q8TB24 985 aa16.18■□□□□ 0.18
HCFC1-201ENST00000310441 ZSWIM5Q9P217 1185 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms