RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 SLC30A9Q6PML9 568 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 STAG2Q8N3U4 1231 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 ATPAF2Q8N5M1 289 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 EXD1Q8NHP7 514 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 PRMT1Q99873 361 aaKnown RBP10.88□□□□□ -0.67
CLIP1-201ENST00000302528 RPRD1BQ9NQG5 326 aaKnown RBP10.88□□□□□ -0.67
CLIP1-201ENST00000302528 MARCOQ9UEW3 520 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-201ENST00000302528 PRIM2P49643 509 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 SYCP2LQ5T4T6 812 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 IL31Q6EBC2 164 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 TMEM154Q6P9G4 183 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 POTEEQ6S8J3 1075 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 HEATR4Q86WZ0 1026 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 FOXP4Q8IVH2 680 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-201ENST00000302528 DDI1Q8WTU0 396 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 MUC3BQ9H195 1237 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 HOXC10Q9NYD6 342 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 LGALS16A8MUM7 142 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 ATP1A3P13637 1013 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 GYS1P13807 737 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 HOXD10P28358 340 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 ADD2P35612 726 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 SDE2Q6IQ49 451 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 TRIM48Q8IWZ4 208 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 RERGLQ9H628 205 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 CROCC2H7BZ55 1655 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 RSPH10B2B2RC85 870 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 CAND2O75155 1236 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 DDHD2O94830 711 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 ASNSP08243 561 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 RSPH10BP0C881 870 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 NLRP11P59045 1033 aaKnown RBP10.88□□□□□ -0.67
CLIP1-201ENST00000302528 GLYCTKQ8IVS8 523 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 PABPC5Q96DU9 382 aaKnown RBP10.88□□□□□ -0.67
CLIP1-201ENST00000302528 WNK4Q96J92 1243 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 CNDP1Q96KN2 507 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 SPRTNQ9H040 489 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-201ENST00000302528 APPL1Q9UKG1 709 aa10.88□□□□□ -0.67
CLIP1-201ENST00000302528 SMG5Q9UPR3 1016 aaKnown RBP10.88□□□□□ -0.67
CLIP1-201ENST00000302528 USP1O94782 785 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 CD2BP2O95400 341 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 HMBSP08397 361 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 SSTR3P32745 418 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 PSMC6P62333 389 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 CNTN1Q12860 1018 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 CDC16Q13042 620 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 TMEM179Q6ZVK1 233 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 THTPAQ9BU02 230 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 POLR3FQ9H1D9 316 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 EPN3Q9H201 632 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 MRGBPQ9NV56 204 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 SPATA2Q9UM82 520 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 ABCB11O95342 1321 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 ENO4A6NNW6 628 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 TRAPPC3O43617 180 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 CDK8P49336 464 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 DHX34Q14147 1143 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 CNGA2Q16280 664 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 DCAF4Q8WV16 495 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 SNRNP27Q8WVK2 155 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 RAVER2Q9HCJ3 691 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 CYP39A1Q9NYL5 469 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 RHOBTB1O94844 696 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 KLHL2O95198 593 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 KRR1Q13601 381 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 SNRNP48Q6IEG0 339 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 TTC33Q6PID6 262 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 TRIM65Q6PJ69 517 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 NSUN6Q8TEA1 469 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 STON1Q9Y6Q2 735 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 FAM135BQ49AJ0 1406 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 TRIM49BA6NDI0 452 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 FAM47E-STBD1D6RA91 191 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 CRKLP46109 303 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 ARMCX4Q5H9R4 360 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 MFSD14CQ5VZR4 134 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 NEK10Q6ZWH5 1172 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 ENOSF1Q7L5Y1 443 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 AGGF1Q8N302 714 aaeCLIP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 ZNF614Q8N883 585 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 MARCH10Q8NA82 808 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 RNASE11Q8TAA1 199 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 OSBPL6Q9BZF3 934 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 RBAKQ9NYW8 714 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 FHOD1Q9Y613 1164 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 POTEMA6NI47 508 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 PEX1O43933 1283 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 ATP6V1C1P21283 382 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 YWHAZP63104 245 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 TWF1Q12792 350 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 TRIM25Q14258 630 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 CCDC157Q569K6 752 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 DAB2IPQ5VWQ8 1189 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 SWSAP1Q6NVH7 229 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 ZNF544Q6NX49 715 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 LAYNQ6UX15 382 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 DPP10Q8N608 796 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 RTL3Q8N8U3 475 aaKnown RBP10.87□□□□□ -0.67
CLIP1-201ENST00000302528 GPR108Q9NPR9 543 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 RPS6KB2Q9UBS0 482 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms