RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 HIF1AQ16665 826 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 METTL7BQ6UX53 244 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 EPM2AIP1Q7L775 607 aaPredicted RBP19.5■□□□□ 0.71
PCDH1-201ENST00000287008 TBC1D1Q86TI0 1168 aaPredicted RBP19.5■□□□□ 0.71
PCDH1-201ENST00000287008 TAF1DQ9H5J8 278 aaPredicted RBP19.5■□□□□ 0.71
PCDH1-201ENST00000287008 TUT1Q9H6E5 874 aaKnown RBP19.5■□□□□ 0.71
PCDH1-201ENST00000287008 HDAC6Q9UBN7 1215 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 ZNF212Q9UDV6 495 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 A0A0G2JND7 137 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 MGEA5O60502 916 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 KPNA6O60684 536 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 TGFB3P10600 412 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 ODC1P11926 461 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 HARS2P49590 506 aaKnown RBP19.5■□□□□ 0.71
PCDH1-201ENST00000287008 KDELC2Q7Z4H8 507 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 DNERQ8NFT8 737 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 SLC7A14Q8TBB6 771 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 SLC35G2Q8TBE7 412 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 GBP5Q96PP8 586 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 MUC3BQ9H195 1237 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 AGPAT5Q9NUQ2 364 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 KLHL11Q9NVR0 708 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 LRG1P02750 347 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 APRTP07741 180 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 SLC8A1P32418 973 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 ATN1P54259 1190 aaPredicted RBP19.5■□□□□ 0.71
PCDH1-201ENST00000287008 PI4K2AQ9BTU6 479 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 GPRC5CQ9NQ84 441 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 AIPL1Q9NZN9 384 aa19.5■□□□□ 0.71
PCDH1-201ENST00000287008 CFAP69A5D8W1 941 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 NKRFO15226 690 aaKnown RBP eCLIP19.49■□□□□ 0.71
PCDH1-201ENST00000287008 GTF2H1P32780 548 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 DSG3P32926 999 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 DDR1Q08345 913 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 TMEM132BQ14DG7 1078 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 P3H1Q32P28 736 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 TRIM68Q6AZZ1 485 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 SEPT8Q92599 483 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 TMEM117Q9H0C3 514 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 ANKRD20A4Q4UJ75 823 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 ANKRD20A8PQ5CZ79 823 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 ANKRD20A2Q5SQ80 823 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 ANKRD20A1Q5TYW2 823 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 ZNF677Q86XU0 584 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 RNF135Q8IUD6 432 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 CCDC124Q96CT7 223 aaKnown RBP19.49■□□□□ 0.71
PCDH1-201ENST00000287008 AMACRQ9UHK6 382 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 SLC30A1Q9Y6M5 507 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 EEF2KO00418 725 aaKnown RBP19.49■□□□□ 0.71
PCDH1-201ENST00000287008 MMEP08473 750 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 MTF1Q14872 753 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 FAM47EQ6ZV65 393 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 SPATA31D1Q6ZQQ2 1576 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 PTK2BQ14289 1009 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 C10orf120Q5SQS8 335 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 DACT2Q5SW24 774 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 RAB42Q8N4Z0 105 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 RUSC1Q9BVN2 902 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 PXMP2Q9NR77 195 aa19.49■□□□□ 0.71
PCDH1-201ENST00000287008 PSMD3O43242 534 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 BRAFP15056 766 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 YY1P25490 414 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 SEC23AQ15436 765 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 SMAD1Q15797 465 aaKnown RBP19.48■□□□□ 0.71
PCDH1-201ENST00000287008 ARHGAP15Q53QZ3 475 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 FASTKD1Q53R41 847 aaKnown RBP19.48■□□□□ 0.71
PCDH1-201ENST00000287008 CENPKQ9BS16 269 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 RIOX1Q9H6W3 641 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 CATSPERBQ9H7T0 1116 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 DPP3Q9NY33 737 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 ITIH6Q6UXX5 1313 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 KDM4FA0A1W2PPD8 638 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 CYP2C8P10632 490 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 FKBP1CQ5VVH2 108 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 PCNX4Q63HM2 1172 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 SPATA4Q8NEY3 305 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 UBA3Q8TBC4 463 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 RAB6BQ9NRW1 208 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 LBRQ14739 615 aaKnown RBP19.48■□□□□ 0.71
PCDH1-201ENST00000287008 NAB2Q15742 525 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 FSCBQ5H9T9 825 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 MED24O75448 989 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 NCAM1P13591 858 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 SHMT1P34896 483 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 FXR1P51114 621 aaKnown RBP eCLIP19.48■□□□□ 0.71
PCDH1-201ENST00000287008 BTBD6Q96KE9 485 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 TRAIPQ9BWF2 469 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 IDI2Q9BXS1 227 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 FGFR1OP2Q9NVK5 253 aa19.48■□□□□ 0.71
PCDH1-201ENST00000287008 COL5A2P05997 1499 aaPredicted RBP19.48■□□□□ 0.71
PCDH1-201ENST00000287008 IRF1P10914 325 aa19.47■□□□□ 0.71
PCDH1-201ENST00000287008 GRIN1Q05586 938 aa19.47■□□□□ 0.71
PCDH1-201ENST00000287008 MORF4L2Q15014 288 aa19.47■□□□□ 0.71
PCDH1-201ENST00000287008 RASSF3Q86WH2 238 aa19.47■□□□□ 0.71
PCDH1-201ENST00000287008 PPHLN1Q8NEY8 458 aaKnown RBP19.47■□□□□ 0.71
PCDH1-201ENST00000287008 USP33Q8TEY7 942 aa19.47■□□□□ 0.71
PCDH1-201ENST00000287008 GTF2H3Q13889 308 aa19.47■□□□□ 0.71
PCDH1-201ENST00000287008 GOLGA7BQ2TAP0 167 aa19.47■□□□□ 0.71
PCDH1-201ENST00000287008 FAM133BQ5BKY9 247 aaKnown RBP19.47■□□□□ 0.71
PCDH1-201ENST00000287008 FBXO38Q6PIJ6 1188 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms