RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SMC3Q9UQE7 1217 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 RIF1Q5UIP0 2472 aaKnown RBP13.92□□□□□ -0.18
CD44-203ENST00000278386 CACNA1IQ9P0X4 2223 aa13.92□□□□□ -0.18
CD44-203ENST00000278386 COL4A2P08572 1712 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 KANSL1LA0AUZ9 987 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 ARHGEF37A1IGU5 675 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 HNRNPDLO14979 420 aaKnown RBP13.91□□□□□ -0.18
CD44-203ENST00000278386 MEFVO15553 781 aaPredicted RBP13.91□□□□□ -0.18
CD44-203ENST00000278386 ABLIM3O94929 683 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 FAM13AO94988 1023 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 CD2BP2O95400 341 aaKnown RBP13.91□□□□□ -0.18
CD44-203ENST00000278386 KRT18P05783 430 aaKnown RBP13.91□□□□□ -0.18
CD44-203ENST00000278386 ATF2P15336 505 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 MARCKSP29966 332 aaPredicted RBP13.91□□□□□ -0.18
CD44-203ENST00000278386 NCKAP1LP55160 1127 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 PRKCQQ04759 706 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 ADCY1Q08828 1119 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 SLC10A6Q3KNW5 377 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 SLC44A4Q53GD3 710 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 TPRG1Q6ZUI0 275 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 C1orf210Q8IVY1 113 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 DDX12PQ92771 950 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 HINFPQ9BQA5 517 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 REEP2Q9BRK0 252 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 NTPCRQ9BSD7 190 aaKnown RBP13.91□□□□□ -0.18
CD44-203ENST00000278386 BCO2Q9BYV7 579 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 DLGAP2Q9P1A6 1054 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 ODF2LQ9ULJ1 636 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 PCDHB8Q9UN66 801 aa13.91□□□□□ -0.18
CD44-203ENST00000278386 NUP210Q8TEM1 1887 aaPredicted RBP13.91□□□□□ -0.18
CD44-203ENST00000278386 ECI2O75521 394 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 SEC24AO95486 1093 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 LMNAP02545 664 aaKnown RBP13.9□□□□□ -0.18
CD44-203ENST00000278386 CLTAP09496 248 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 GLULP15104 373 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 UBA7P41226 1012 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 TNFSF9P41273 254 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 TWF1Q12792 350 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 TPGS2Q68CL5 300 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 IQCEQ6IPM2 695 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 HAUS6Q7Z4H7 955 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 TCEAL8Q8IYN2 117 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 TMEM130Q8N3G9 435 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 TCEAL4Q96EI5 215 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 AK8Q96MA6 479 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 HAPLN2Q9GZV7 340 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 ZHX3Q9H4I2 956 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 LTB4R2Q9NPC1 389 aa13.9□□□□□ -0.18
CD44-203ENST00000278386 AVENQ9NQS1 362 aaPredicted RBP13.9□□□□□ -0.18
CD44-203ENST00000278386 SPATA6Q9NWH7 488 aaPredicted RBP13.9□□□□□ -0.18
CD44-203ENST00000278386 AFF4Q9UHB7 1163 aaKnown RBP13.9□□□□□ -0.18
CD44-203ENST00000278386 UBQLN1Q9UMX0 589 aaKnown RBP13.9□□□□□ -0.18
CD44-203ENST00000278386 ZNF197O14709 1029 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 LAMTOR5O43504 91 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 XPOTO43592 962 aaKnown RBP13.89□□□□□ -0.19
CD44-203ENST00000278386 TBC1D4O60343 1298 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 TBCAO75347 108 aaKnown RBP13.89□□□□□ -0.19
CD44-203ENST00000278386 SP9P0CG40 484 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 CD72P21854 359 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 YWHAHQ04917 246 aaPredicted RBP13.89□□□□□ -0.19
CD44-203ENST00000278386 MRPL58Q14197 206 aaKnown RBP13.89□□□□□ -0.19
CD44-203ENST00000278386 GRM2Q14416 872 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 ARSHQ5FYA8 562 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 PRSS36Q5K4E3 855 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 CYP4A22Q5TCH4 519 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 USP37Q86T82 979 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 MYCT1Q8N699 235 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 FAM212AQ96EL1 285 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 PLA2G2FQ9BZM2 168 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 SEMA4AQ9H3S1 761 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 RPF1Q9H9Y2 349 aaKnown RBP13.89□□□□□ -0.19
CD44-203ENST00000278386 PLEKHA5Q9HAU0 1116 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 PARVGQ9HBI0 331 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 ASAH2Q9NR71 780 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 YIPF1Q9Y548 306 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.89□□□□□ -0.19
CD44-203ENST00000278386 TIMM13Q9Y5L4 95 aaPredicted RBP13.89□□□□□ -0.19
CD44-203ENST00000278386 SCN1AP35498 2009 aa13.89□□□□□ -0.19
CD44-203ENST00000278386 TTC26A0AVF1 554 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 FAM170BA6NMN3 283 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 SLC26A4O43511 780 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 BMP15O95972 392 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 MYL4P12829 197 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 PLCG1P19174 1290 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 LRPAP1P30533 357 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 CCR2P41597 374 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 MCM2P49736 904 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 GUCY2FP51841 1108 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 MCM6Q14566 821 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 KARSQ15046 597 aaKnown RBP13.88□□□□□ -0.19
CD44-203ENST00000278386 KYAT1Q16773 422 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 ZBTB41Q5SVQ8 909 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 LARP1BQ659C4 914 aaKnown RBP13.88□□□□□ -0.19
CD44-203ENST00000278386 TANGO2Q6ICL3 276 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 DSTYKQ6XUX3 929 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 RNF19BQ6ZMZ0 732 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 HS6ST3Q8IZP7 471 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 ELSPBP1Q96BH3 223 aa13.88□□□□□ -0.19
CD44-203ENST00000278386 ZNF512Q96ME7 567 aaPredicted RBP13.88□□□□□ -0.19
CD44-203ENST00000278386 PGLYRP2Q96PD5 576 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms