RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 ZPBPQ9BS86 351 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 BRINP2Q9C0B6 783 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 THAP9Q9H5L6 903 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 USP40Q9NVE5 1235 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 TBC1D14Q9P2M4 693 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 MBD2Q9UBB5 411 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 TRIM33Q9UPN9 1127 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 SNX14Q9Y5W7 946 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.17□□□□□ -1.1
GPNMB-201ENST00000258733 PDS5AQ29RF7 1337 aaKnown RBP8.17□□□□□ -1.1
GPNMB-201ENST00000258733 A0A0U1RQJ8 604 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 TRIM75PA6NK02 468 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 ATP6V1G2-DDX39BF2Z307 99 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 H3BQV1 296 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 LINC01387J3KSC0 135 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 NDUFA2O43678 99 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 BAG2O95816 211 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 CYP3A4P08684 503 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 KRT16P08779 473 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 ETV1P50549 477 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 RPS3AP61247 264 aaKnown RBP8.17□□□□□ -1.1
GPNMB-201ENST00000258733 CSNK2BP67870 215 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 PLD1Q13393 1074 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 DHX34Q14147 1143 aaKnown RBP8.17□□□□□ -1.1
GPNMB-201ENST00000258733 LRRC41Q15345 812 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 TIGD2Q4W5G0 525 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 CEP85Q6P2H3 762 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 ZC3H18Q86VM9 953 aaKnown RBP8.17□□□□□ -1.1
GPNMB-201ENST00000258733 TSPYL5Q86VY4 417 aaPredicted RBP8.17□□□□□ -1.1
GPNMB-201ENST00000258733 PASD1Q8IV76 773 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 CDH26Q8IXH8 852 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 ZNF540Q8NDQ6 660 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 PHOSPHO2Q8TCD6 241 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 TNFRSF25Q93038 417 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 E2F7Q96AV8 911 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 TNIP3Q96KP6 325 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 CCDC138Q96M89 665 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 C7orf25Q9BPX7 421 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 NUSAP1Q9BXS6 441 aaKnown RBP8.17□□□□□ -1.1
GPNMB-201ENST00000258733 SLC35C2Q9NQQ7 365 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 ZNHIT2Q9UHR6 403 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 CPSF3Q9UKF6 684 aaKnown RBP8.17□□□□□ -1.1
GPNMB-201ENST00000258733 STK38LQ9Y2H1 464 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 BCL9O00512 1426 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 MYH7P12883 1935 aa8.17□□□□□ -1.1
GPNMB-201ENST00000258733 GCOM1H8Y6P7 765 aaPredicted RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 ALOX15BO15296 676 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 PIP5K1CO60331 668 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 ECE2O60344 883 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 LYNP07948 512 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 APEHP13798 732 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 VCLP18206 1134 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 DNAJB2P25686 324 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 ZNF76P36508 570 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 EIF4A1P60842 406 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 NOP14P78316 857 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 S100A12P80511 92 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 COG7P83436 770 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 APBA1Q02410 837 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 NONOQ15233 471 aaKnown RBP eCLIP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 GRTP1Q5TC63 336 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 TMEM132EQ6IEE7 984 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 PDE12Q6L8Q7 609 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 XKR5Q6UX68 686 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 HDAC2Q92769 488 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 GRIP2Q9C0E4 1043 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 AMACRQ9UHK6 382 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 PCDHA12Q9UN75 941 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 NUP155O75694 1391 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 SEMA3EO15041 775 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 LTA4HP09960 611 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 ZCCHC18P0CG32 403 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 HSMCR30P0CW71 290 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 PRKCAP17252 672 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 HSPA13P48723 471 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 SLC9A3P48764 834 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 NCALDP61601 193 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 CDC20Q12834 499 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 NR5A1Q13285 461 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 USP50Q70EL3 339 aaPredicted RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 UNC45BQ8IWX7 931 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 RTKN2Q8IZC4 609 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 CCDC197Q8NCU1 140 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 PRPF31Q8WWY3 499 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 HS6ST2Q96MM7 605 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 ZSWIM6Q9HCJ5 1215 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 INTS7Q9NVH2 962 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 DACT1Q9NYF0 836 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 VTI1BQ9UEU0 232 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 ENOPH1Q9UHY7 261 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 GMEB2Q9UKD1 530 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 PNMA8BQ9ULN7 279 aaPredicted RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 ZC3H13Q5T200 1668 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 SH3D21A4FU49 640 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 A6NL46 340 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 POLR1CO15160 346 aaPredicted RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 HSF2BPO75031 334 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 SURF6O75683 361 aaKnown RBP8.16□□□□□ -1.1
GPNMB-201ENST00000258733 ALX3O95076 343 aa8.16□□□□□ -1.1
GPNMB-201ENST00000258733 TGDSO95455 350 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms