RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 NINJ2Q9NZG7 142 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 PARP2Q9UGN5 583 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 JAK3P52333 1124 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 GAD2Q05329 585 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 ALCAMQ13740 583 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 ANKMY2Q8IV38 441 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 PARP9Q8IXQ6 854 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 SNF8Q96H20 258 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 IWS1Q96ST2 819 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 L3MBTL1Q9Y468 752 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 F8VP50 259 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 RASSF9O75901 435 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 VNN1O95497 513 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 CST3P01034 146 aaPredicted RBP22.65■■□□□ 1.22
TRIM28-201ENST00000253024 UNGP13051 313 aaPredicted RBP22.65■■□□□ 1.22
TRIM28-201ENST00000253024 BRD2P25440 801 aaKnown RBP22.65■■□□□ 1.22
TRIM28-201ENST00000253024 DDX27Q96GQ7 796 aaKnown RBP22.65■■□□□ 1.22
TRIM28-201ENST00000253024 TJP2Q9UDY2 1190 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 RBBP6Q7Z6E9 1792 aaKnown RBP22.65■■□□□ 1.22
TRIM28-201ENST00000253024 GJB1P08034 283 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 SRGAP2CP0DJJ0 459 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 HSPA6P17066 643 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 VSTM1Q6UX27 236 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 YTHDF3Q7Z739 585 aaKnown RBP22.65■■□□□ 1.22
TRIM28-201ENST00000253024 MSTO1Q9BUK6 570 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 OSBPL8Q9BZF1 889 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 DEFB129Q9H1M3 183 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 SAYSD1Q9NPB0 183 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 DNPEPQ9ULA0 475 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 GAS8O95995 478 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 PAEPP09466 180 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 DRG2P55039 364 aaKnown RBP22.65■■□□□ 1.22
TRIM28-201ENST00000253024 HADHBP55084 474 aaKnown RBP22.65■■□□□ 1.22
TRIM28-201ENST00000253024 STRN3Q13033 797 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 MYBPC2Q14324 1141 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 C12orf56Q8IXR9 622 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 KCTD17Q8N5Z5 321 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 LRRN4Q8WUT4 740 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 MFSD14AQ96MC6 490 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 MCEEQ96PE7 176 aa22.65■■□□□ 1.22
TRIM28-201ENST00000253024 WDR91A4D1P6 747 aa22.64■■□□□ 1.22
TRIM28-201ENST00000253024 K7ERI5 159 aa22.64■■□□□ 1.22
TRIM28-201ENST00000253024 FSCN2O14926 492 aa22.64■■□□□ 1.22
TRIM28-201ENST00000253024 STX2P32856 288 aa22.64■■□□□ 1.22
TRIM28-201ENST00000253024 NOP14P78316 857 aaKnown RBP22.64■■□□□ 1.22
TRIM28-201ENST00000253024 DEFB132Q7Z7B7 95 aa22.64■■□□□ 1.22
TRIM28-201ENST00000253024 VSIG10LQ86VR7 867 aa22.64■■□□□ 1.22
TRIM28-201ENST00000253024 RBBP8NLQ8NC74 664 aaPredicted RBP22.64■■□□□ 1.22
TRIM28-201ENST00000253024 DEPTORQ8TB45 409 aa22.64■■□□□ 1.22
TRIM28-201ENST00000253024 LRRC19Q9H756 370 aa22.64■■□□□ 1.22
TRIM28-201ENST00000253024 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.64■■□□□ 1.22
TRIM28-201ENST00000253024 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.64■■□□□ 1.229e-8■□□□□ 9.1
TRIM28-201ENST00000253024 SLC9A2Q9UBY0 812 aa22.64■■□□□ 1.22
TRIM28-201ENST00000253024 IVDP26440 423 aa22.64■■□□□ 1.21
TRIM28-201ENST00000253024 CCND2P30279 289 aa22.64■■□□□ 1.21
TRIM28-201ENST00000253024 TRIM50Q86XT4 487 aa22.64■■□□□ 1.21
TRIM28-201ENST00000253024 SUGP1Q8IWZ8 645 aaKnown RBP22.64■■□□□ 1.21
TRIM28-201ENST00000253024 NAALADL1Q9UQQ1 740 aa22.64■■□□□ 1.21
TRIM28-201ENST00000253024 C5orf60A6NFR6 353 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 FDX1P10109 184 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 EMC2Q15006 297 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 TAOK1Q7L7X3 1001 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 TRPM8Q7Z2W7 1104 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 ATP6V0A1Q93050 837 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 KLF6Q99612 283 aaPredicted RBP22.63■■□□□ 1.21
TRIM28-201ENST00000253024 ZWILCHQ9H900 591 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 ATP6V0A4Q9HBG4 840 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 TTC4O95801 387 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 KCNA2P16389 499 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 CDC25CP30307 473 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 MAMLD1Q13495 774 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 SNCBQ16143 134 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 TEPSINQ96N21 525 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 RBM15Q96T37 977 aaKnown RBP eCLIP22.63■■□□□ 1.217e-9■■□□□ 11.8
TRIM28-201ENST00000253024 TMEM121Q9BTD3 319 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 PLVAPQ9BX97 442 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 VPS37BQ9H9H4 285 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 ALG13Q9NP73 1137 aaKnown RBP22.63■■□□□ 1.21
TRIM28-201ENST00000253024 HACL1Q9UJ83 578 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 PCDHB2Q9Y5E7 798 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 IVNS1ABPQ9Y6Y0 642 aa22.63■■□□□ 1.21
TRIM28-201ENST00000253024 GTF2H1P32780 548 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 TMEM132BQ14DG7 1078 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 CYP1B1Q16678 543 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 CIAPIN1Q6FI81 312 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 MFSD7Q6UXD7 560 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 CCDC63Q8NA47 563 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 TGS1Q96RS0 853 aaKnown RBP22.62■■□□□ 1.21
TRIM28-201ENST00000253024 NXF1Q9UBU9 619 aaKnown RBP22.62■■□□□ 1.21
TRIM28-201ENST00000253024 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.62■■□□□ 1.21
TRIM28-201ENST00000253024 LOC102724159A0A0B4J2E5 919 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 GOLGA8RI6L899 631 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 KRT1P04264 644 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 PWP2Q15269 919 aaKnown RBP22.62■■□□□ 1.21
TRIM28-201ENST00000253024 LRRC71Q8N4P6 559 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 JDP2Q8WYK2 163 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 TACO1Q9BSH4 297 aaKnown RBP22.62■■□□□ 1.21
TRIM28-201ENST00000253024 PAGR1Q9BTK6 254 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 MTMR12Q9C0I1 747 aa22.62■■□□□ 1.21
TRIM28-201ENST00000253024 A1CFQ9NQ94 594 aaKnown RBP22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms