RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 MED7O43513 233 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 CST8O60676 142 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 RARGP13631 454 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 PAX7P23759 505 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 KDSRQ06136 332 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 PPATQ06203 517 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 TNFAIP1Q13829 316 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 CDKL2Q92772 493 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ROPN1BQ9BZX4 212 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 RANBP17Q9H2T7 1088 aaKnown RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ROPN1Q9HAT0 212 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 POLRMTO00411 1230 aaKnown RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 CYP11B1P15538 503 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 BRD2P25440 801 aaKnown RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ROR1Q01973 937 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ATG16L1Q676U5 607 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 SNRNP48Q6IEG0 339 aaKnown RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 CCDC125Q86Z20 511 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 MAP7D3Q8IWC1 876 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ACAP3Q96P50 834 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 RPAP3Q9H6T3 665 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 KIAA1586Q9HCI6 787 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 PCDHAC2Q9Y5I4 1007 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 TPD52P55327 224 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 BCAR1P56945 870 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ST13P4Q8IZP2 240 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 SHISA4Q96DD7 197 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 MTO1Q9Y2Z2 717 aaKnown RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 NUP214P35658 2090 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 SPATA31A5Q5VU36 1347 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 SPATA31A7Q8IWB4 1347 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 hCG_2014768A0A024R1R8 64 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 LRRC36Q1X8D7 754 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 C3orf62Q6ZUJ4 267 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ZNF384Q8TF68 577 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 CCDC124Q96CT7 223 aaKnown RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 TAAR1Q96RJ0 339 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 MKNK1Q9BUB5 465 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 UBXN6Q9BZV1 441 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 RAB6BQ9NRW1 208 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 TOPAZ1Q8N9V7 1692 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ITIH2P19823 946 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 POLD1P28340 1107 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 TNFRSF8P28908 595 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 FLT3P36888 993 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 SUGP1Q8IWZ8 645 aaKnown RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ATXN7L3BQ96GX2 97 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 PPP1R36Q96LQ0 422 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 LRRC4Q9HBW1 653 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 PNMA3Q9UL41 463 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 KIF1AQ12756 1690 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 HNRNPH3P31942 346 aaKnown RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 MMEL1Q495T6 779 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 SLFN12LQ6IEE8 588 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ZNF662Q6ZS27 426 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 FLAD1Q8NFF5 587 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 DHX35Q9H5Z1 703 aaKnown RBP4.87□□□□□ -1.63
VPS13C-201ENST00000249837 CYP26B1Q9NR63 512 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 PARVAQ9NVD7 372 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 SLC9A2Q9UBY0 812 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 CSADQ9Y600 493 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 ZHX2Q9Y6X8 837 aa4.87□□□□□ -1.63
VPS13C-201ENST00000249837 TRIM49D1C9J1S8 452 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 CLGNO14967 610 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 MKRN3Q13064 507 aaKnown RBP4.86□□□□□ -1.63
VPS13C-201ENST00000249837 PPP1R2P3Q6NXS1 205 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 PRUNE1Q86TP1 453 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 CTNNAL1Q9UBT7 734 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 CNTNAP4Q9C0A0 1308 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 UBTFL6P0CB48 400 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-201ENST00000249837 ADRA2BP18089 450 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 CCND1P24385 295 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 ZNF200P98182 395 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-201ENST00000249837 IFRD2Q12894 506 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-201ENST00000249837 ORC1Q13415 861 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 MAPK6Q16659 721 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 CLEC16AQ2KHT3 1053 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 SMTNL2Q2TAL5 461 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 GPAT2Q6NUI2 795 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 RSPH3Q86UC2 560 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 PRELID2Q8N945 189 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 FAM71DQ8N9W8 422 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 TTC13Q8NBP0 860 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 RPS6KC1Q96S38 1066 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 MOV10L1Q9BXT6 1211 aaKnown RBP4.86□□□□□ -1.63
VPS13C-201ENST00000249837 DCLK3Q9C098 648 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 JPH1Q9HDC5 661 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-201ENST00000249837 NDE1Q9NXR1 346 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 DDX56Q9NY93 547 aaKnown RBP4.86□□□□□ -1.63
VPS13C-201ENST00000249837 L3MBTL1Q9Y468 752 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 CDC25CP30307 473 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 SREBF1P36956 1147 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 GPC3P51654 580 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 ITGB3BPQ13352 177 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-201ENST00000249837 PDZD4Q76G19 769 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-201ENST00000249837 NEUROG2Q9H2A3 272 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 Q9H521 79 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 GTF3C4Q9UKN8 822 aa4.86□□□□□ -1.63
VPS13C-201ENST00000249837 NOL3O60936 208 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms