RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	YLR462W	O13556	202 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	CMD1	P06787	147 aa	Known RBP	3.43	□□□□□ -1.86
VMA22	YHR060W	SNF4	P12904	322 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	MAG1	P22134	296 aa	Known RBP	3.43	□□□□□ -1.86
VMA22	YHR060W	SEC14	P24280	304 aa	Known RBP	3.43	□□□□□ -1.86
VMA22	YHR060W	SFC1	P33303	322 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	SMP1	P38128	452 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	DOG2	P38773	246 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	DOG1	P38774	246 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	KRE9	P39005	276 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	YEL075C	P39972	122 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	HMF1	P40037	129 aa	Known RBP	3.43	□□□□□ -1.86
VMA22	YHR060W	SOK1	P40317	901 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	FMP32	P43557	207 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	YFH7	P43591	353 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	YJL028W	P47062	111 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	AIM25	P47140	327 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	COQ5	P49017	307 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	SBH2	P52871	88 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	ACT1	P60010	375 aa	Known RBP	3.43	□□□□□ -1.86
VMA22	YHR060W	ARO80	Q04052	950 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	YMR315W	Q04869	349 aa	Known RBP	3.43	□□□□□ -1.86
VMA22	YHR060W	MSA1	Q08471	629 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	YPL257W	Q08974	193 aa		3.43	□□□□□ -1.86
VMA22	YHR060W	NUP157	P40064	1391 aa	Known RBP	3.42	□□□□□ -1.86
VMA22	YHR060W	LSM4	P40070	187 aa	Known RBP	3.42	□□□□□ -1.86
VMA22	YHR060W	UFE1	P41834	346 aa		3.42	□□□□□ -1.86
VMA22	YHR060W	UFD1	P53044	361 aa		3.42	□□□□□ -1.86
VMA22	YHR060W	COS6	P53344	381 aa		3.42	□□□□□ -1.86
VMA22	YHR060W	SUE1	Q06524	206 aa		3.42	□□□□□ -1.86
VMA22	YHR060W	YOR283W	Q12040	230 aa	Known RBP	3.42	□□□□□ -1.86
VMA22	YHR060W	YPR011C	Q12251	326 aa		3.42	□□□□□ -1.86
VMA22	YHR060W	ATG5	Q12380	294 aa		3.42	□□□□□ -1.86
VMA22	YHR060W	YAL067W-A	Q8TGK6	75 aa		3.42	□□□□□ -1.86
VMA22	YHR060W	PET20	Q99373	253 aa		3.42	□□□□□ -1.86
VMA22	YHR060W	SWI1	P09547	1314 aa		3.42	□□□□□ -1.86
VMA22	YHR060W	SIR2	P06700	562 aa		3.41	□□□□□ -1.86
VMA22	YHR060W	RNP1	P32385	249 aa		3.41	□□□□□ -1.86
VMA22	YHR060W	TRR2	P38816	342 aa		3.41	□□□□□ -1.86
VMA22	YHR060W	YNL184C	P53876	108 aa		3.41	□□□□□ -1.86
VMA22	YHR060W	IMP4	P53941	290 aa	Known RBP	3.41	□□□□□ -1.86
VMA22	YHR060W	ECM19	Q06011	112 aa		3.41	□□□□□ -1.86
VMA22	YHR060W	YDL211C	Q12121	372 aa		3.41	□□□□□ -1.86
VMA22	YHR060W	PEX11	Q12462	236 aa		3.41	□□□□□ -1.86
VMA22	YHR060W	ADH3	P07246	375 aa	Known RBP	3.4	□□□□□ -1.87
VMA22	YHR060W	FCY2	P17064	533 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	ISY1	P21374	235 aa	Predicted RBP	3.4	□□□□□ -1.87
VMA22	YHR060W	TCA17	P32613	152 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	PTM1	P32857	523 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	CLG1	P35190	452 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	TRM7	P38238	310 aa	Known RBP	3.4	□□□□□ -1.87
VMA22	YHR060W	YAP3	P38749	330 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	AST2	P39945	430 aa	Known RBP	3.4	□□□□□ -1.87
VMA22	YHR060W	YER076C	P40049	302 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	RSM25	P40496	264 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	COG5	P53951	403 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	YPL039W	Q03080	316 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	HPT1	Q04178	221 aa	Known RBP	3.4	□□□□□ -1.87
VMA22	YHR060W	EMI1	Q04406	187 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	GRH1	Q04410	372 aa	Known RBP	3.4	□□□□□ -1.87
VMA22	YHR060W	YPL264C	Q08980	353 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	RIO1	Q12196	484 aa	Known RBP	3.4	□□□□□ -1.87
VMA22	YHR060W	TIM22	Q12328	207 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	YPL229W	Q99395	206 aa		3.4	□□□□□ -1.87
VMA22	YHR060W	CDC7	P06243	507 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	RPS24A	P0CX31	135 aa	Known RBP	3.39	□□□□□ -1.87
VMA22	YHR060W	RPS24B	P0CX32	135 aa	Known RBP	3.39	□□□□□ -1.87
VMA22	YHR060W	GRX2	P17695	143 aa	Known RBP	3.39	□□□□□ -1.87
VMA22	YHR060W	SEC22	P22214	214 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	ERG24	P32462	438 aa	Known RBP	3.39	□□□□□ -1.87
VMA22	YHR060W	SKG1	P36169	355 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	MRPL27	P36526	146 aa	Predicted RBP	3.39	□□□□□ -1.87
VMA22	YHR060W	SWD3	P38123	315 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	EDC3	P39998	551 aa	Known RBP	3.39	□□□□□ -1.87
VMA22	YHR060W	YNL010W	P53981	241 aa	Known RBP	3.39	□□□□□ -1.87
VMA22	YHR060W	OSH6	Q02201	448 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	MRPS16	Q02608	121 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	YDR476C	Q03362	224 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	YLR179C	Q06252	201 aa	Known RBP	3.39	□□□□□ -1.87
VMA22	YHR060W	GGA1	Q06336	557 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	RDI1	Q12434	202 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	YMR230W-A	Q3E7B5	62 aa		3.39	□□□□□ -1.87
VMA22	YHR060W	CBP6	P07253	162 aa	Predicted RBP	3.38	□□□□□ -1.87
VMA22	YHR060W	YKR041W	P36134	250 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	COS8	P38723	381 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	RPF1	P38805	295 aa	Known RBP	3.38	□□□□□ -1.87
VMA22	YHR060W	NVJ1	P38881	321 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	YAR068W	P39564	161 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	GIM4	P40005	111 aa	Known RBP	3.38	□□□□□ -1.87
VMA22	YHR060W	GLE2	P40066	365 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	FIS1	P40515	155 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	MRPL49	P40858	161 aa	Predicted RBP	3.38	□□□□□ -1.87
VMA22	YHR060W	UBC12	P52491	188 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	SDT1	P53078	280 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	FLC3	P53121	802 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	PET191	Q02772	108 aa		3.38	□□□□□ -1.87
VMA22	YHR060W	RPS19A	P07280	144 aa	Known RBP	3.37	□□□□□ -1.87
VMA22	YHR060W	RPS19B	P07281	144 aa	Predicted RBP	3.37	□□□□□ -1.87
VMA22	YHR060W	DSF1	P0CX08	502 aa		3.37	□□□□□ -1.87
VMA22	YHR060W	YNR073C	P0CX09	502 aa		3.37	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms